2N5F
Solution structure of the dehydroascorbate reductase 3A from Populus trichocarpa
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.7-1.3 mM [U-100% 13C; U-100% 15N] Pt-DHAR3A | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
2 | 3D HNCA | 0.7-1.3 mM [U-100% 13C; U-100% 15N] Pt-DHAR3A | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
3 | 3D HNCO | 0.7-1.3 mM [U-100% 13C; U-100% 15N] Pt-DHAR3A | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
4 | 3D HN(CO)CA | 0.7-1.3 mM [U-100% 13C; U-100% 15N] Pt-DHAR3A | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
5 | 3D CBCA(CO)NH | 0.7-1.3 mM [U-100% 13C; U-100% 15N] Pt-DHAR3A | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
6 | 3D 1H-15N TOCSY | 0.7-1.3 mM [U-100% 13C; U-100% 15N] Pt-DHAR3A | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
7 | 3D 1H-13C NOESY | 0.7-1.3 mM [U-100% 13C; U-100% 15N] Pt-DHAR3A | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
8 | 3D HNHA | 0.7-1.3 mM [U-100% 13C; U-100% 15N] Pt-DHAR3A | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
9 | 3D HCACO | 0.7-1.3 mM [U-100% 13C; U-100% 15N] Pt-DHAR3A | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, water refinement | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA | v 2.3 | Linge, O'Donoghue and Nilges |
2 | refinement | ARIA | v 2.3 | Linge, O'Donoghue and Nilges |
3 | refinement | CNS | v 1.21 | Brunger, Adams, Clore, Gros, Nilges and Read |
4 | structure solution | CNS | v 1.21 | Brunger, Adams, Clore, Gros, Nilges and Read |
5 | data analysis | NMRView | v 2.4 | Johnson, One Moon Scientific |
6 | chemical shift assignment | CcpNMR | v 2.4.1 | CCPN |
7 | peak picking | CcpNMR | v 2.4.1 | CCPN |