2RQ0
Solution Structure of Mouse Lipocalin-type Prostaglandin D Synthase Possessing the Intrinsic Disulfide Bond
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-13C; U-15N] Prostaglandin-H2 D-isomerase-1, 20 mM [U-2H] acetic acid-2 | 90% H2O/10% D2O | 0.02 | 4 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 0.5 mM [U-13C; U-15N] Prostaglandin-H2 D-isomerase-3, 20 mM [U-2H] acetic acid-4 | 99.9% D2O | 0.02 | 4 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 0.5 mM [U-13C; U-15N] Prostaglandin-H2 D-isomerase-1, 20 mM [U-2H] acetic acid-2 | 90% H2O/10% D2O | 0.02 | 4 | ambient | 298 | |
4 | 3D HNCACB | 0.5 mM [U-13C; U-15N] Prostaglandin-H2 D-isomerase-1, 20 mM [U-2H] acetic acid-2 | 90% H2O/10% D2O | 0.02 | 4 | ambient | 298 | |
5 | 3D HBHA(CO)NH | 0.5 mM [U-13C; U-15N] Prostaglandin-H2 D-isomerase-1, 20 mM [U-2H] acetic acid-2 | 90% H2O/10% D2O | 0.02 | 4 | ambient | 298 | |
6 | 3D HCCH-TOCSY | 0.5 mM [U-13C; U-15N] Prostaglandin-H2 D-isomerase-3, 20 mM [U-2H] acetic acid-4 | 99.9% D2O | 0.02 | 4 | ambient | 298 | |
7 | 3D 1H-15N NOESY | 0.5 mM [U-13C; U-15N] Prostaglandin-H2 D-isomerase-1, 20 mM [U-2H] acetic acid-2 | 90% H2O/10% D2O | 0.02 | 4 | ambient | 298 | |
8 | 3D 1H-15N TOCSY | 0.5 mM [U-13C; U-15N] Prostaglandin-H2 D-isomerase-1, 20 mM [U-2H] acetic acid-2 | 90% H2O/10% D2O | 0.02 | 4 | ambient | 298 | |
9 | 3D 1H-13C NOESY | 0.5 mM [U-13C; U-15N] Prostaglandin-H2 D-isomerase-3, 20 mM [U-2H] acetic acid-4 | 99.9% D2O | 0.02 | 4 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, torsion angle dynamics | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 3000 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 1.2 | |
2 | structure solution | CNS | 1.2 |