2K2J
NMR solution structure of the split PH domain from Phospholipase C gamma 2
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-edited_NOESY | 0.8-1.0 mM [U-15N] split PH domain from Phospholipase C gamma 2, 90% H2O, 10% D2O | 90% H2O/10% D2O | 150mM NaCl | 6.5 | ambient | 298 | |
2 | 3D_13C-edited_NOESY | 0.8-1.0 mM [U-13C; U-15N] split PH domain from Phospholipase C gamma 2 | 100% D2O | 150mM NaCl | 6.5 | ambient | 298 | |
3 | 3D_13C-edited_aromatic_NOESY | 0.8-1.0 mM [U-13C; U-15N] split PH domain from Phospholipase C gamma 2 | 100% D2O | 150mM NaCl | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | UNITYPLUS | 500 |
3 | Bruker | AVANCE | 700 |
4 | Varian | INOVA | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | Ab initio simulated annealing protocol within the CNS program, with PARALLHDGv5.3 force field and PROLSQ non-bonded energy function. This protocol adopts a mixture of Cartesian molecular dynamics and torsion angle dynamics simulated annealing. | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | 20 structures for lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger A. T. et.al. |