2K5U
Solution structure of myirstoylated yeast ARF1 protein, GDP-bound
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D CBCA(CO)NH | 0.8 mM [U-98% 13C; U-98% 15N] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
2 | 3D HNCA | 0.8 mM [U-98% 13C; U-98% 15N] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
3 | 3D HNCO | 0.8 mM [U-13C; U-15N; U-2H] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
4 | 3D HNCACB | 0.8 mM [U-13C; U-15N; U-2H] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
5 | 3D HN(CO)CA | 0.8 mM [U-13C; U-15N; U-2H] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
6 | 3D HN(COCA)CB | 0.8 mM [U-13C; U-15N; U-2H] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
7 | 3D 1H-15N NOESY | 0.8 mM [U-13C; U-15N; U-2H] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
8 | 3D 1H-13C NOESY | 0.8 mM [U-100% 13C; U-100% 15N; 80% 2H] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
9 | 3D 13C-filtered-NOESY-13C-edited NOESY | 0.8 mM [U-100% 13C; U-100% 15N; 80% 2H] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
10 | 3D doubly-enhanced 13C exicted C-CmHm-TOCSY | 0.8 mM [U-100% 13C; U-100% 15N; 80% 2H] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
11 | 2D HSQC-TROSY | 0.8 mM [U-13C; U-15N; U-2H] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
12 | 2D HSQC-TROSY | 0.8 mM [U-13C; U-15N; U-2H] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
13 | 3D HNCO-JNCO | 0.8 mM [U-13C; U-15N; U-2H] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
14 | 3D HNCO-JNCO | 0.8 mM [U-13C; U-15N; U-2H] myr-yARF1.GDP | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 16 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | Varian | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
5 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |