2LLH
NMR structure of Npm1_c70
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 7.2 | ambient | 298 | |
2 | 3D CBCA(CO)NH | 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 7.2 | ambient | 298 | |
3 | 3D HNCO | 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 7.2 | ambient | 298 | |
4 | 3D HNCA | 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 7.2 | ambient | 298 | |
5 | 3D HNCACB | 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 7.2 | ambient | 298 | |
6 | 3D HBHA(CO)NH | 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 7.2 | ambient | 298 | |
7 | 3D HN(CO)CA | 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 7.2 | ambient | 298 | |
8 | 3D HN(CA)CO | 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 7.2 | ambient | 298 | |
9 | 3D HCCH-TOCSY | 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 7.2 | ambient | 298 | |
10 | 2D 1H-1H NOESY | 0.5 mM [U-15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 7.2 | ambient | 298 | |
11 | 3D 1H-13C NOESY | 0.5 mM [U-13C; U-15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 7.2 | ambient | 298 | |
12 | 3D 1H-15N NOESY | 0.5 mM [U-15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 7.2 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
2 | Bruker | AVANCE | 700 |
3 | Bruker | AVANCE | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics, simulated annealing | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.1 | Bruker Biospin |
2 | processing | TopSpin | 2.1 | Bruker Biospin |
3 | chemical shift assignment | CARA | 2.1 | Keller and Wuthrich |
4 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax | |
5 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
6 | refinement | Amber | 11.0 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm |
7 | validation | PSVS | Bhattacharya and Montelione |