2M7X
Structural and Functional Analysis of Transmembrane Segment IV of the Salt Tolerance Protein Sod2
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.2-0.7 mM [U-99% 15N] Sod2, 50 v/v CDCl3, 50 v/v 2-propanol | CDCl3/2-propanol | not measured | ambient | 303.15 | ||
2 | 3D 1H-15N NOESY-HSQC | 0.2-0.7 mM [U-99% 15N] Sod2, 50 v/v CDCl3, 50 v/v 2-propanol | CDCl3/2-propanol | not measured | ambient | 303.15 | ||
3 | 3D 1H-15N TOCSY-HSQC | 0.2-0.7 mM [U-99% 15N] Sod2, 50 v/v CDCl3, 50 v/v 2-propanol | CDCl3/2-propanol | not measured | ambient | 303.15 | ||
4 | 3D HNHA | 0.2-0.7 mM [U-99% 15N] Sod2, 50 v/v CDCl3, 50 v/v 2-propanol | CDCl3/2-propanol | not measured | ambient | 303.15 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | VnmrJ |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 25 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VnmrJ | Varian | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | peak picking | NMRViewJ | Johnson, One Moon Scientific | |
4 | data analysis | NMRViewJ | Johnson, One Moon Scientific | |
5 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |