5UJQ
NMR Solution Structure of the Two-component Bacteriocin CbnXY
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1 mM [U-99% 13C; U-99% 15N] CbnY, 50 % D trifluoroethanol, 50 % water, 0.01 % DSS | trifluoroethanol/water | 0 | 6 | 760 mmHg | 300 | Varian VNMRS 700 |
2 | 2D 1H-1H NOESY | 1 mM [U-99% 13C; U-99% 15N] CbnY, 50 % D trifluoroethanol, 50 % water, 0.01 % DSS | trifluoroethanol/water | 0 | 6 | 760 mmHg | 300 | Varian VNMRS 700 |
3 | 2D 1H-15N HSQC | 1 mM [U-99% 13C; U-99% 15N] CbnY, 50 % D trifluoroethanol, 50 % water, 0.01 % DSS | trifluoroethanol/water | 0 | 6 | 760 mmHg | 300 | Varian VNMRS 700 |
4 | 2D 1H-13C HSQC | 1 mM [U-99% 13C; U-99% 15N] CbnY, 50 % D trifluoroethanol, 50 % water, 0.01 % DSS | trifluoroethanol/water | 0 | 6 | 760 mmHg | 300 | Varian VNMRS 700 |
5 | 3D HCCH-TOCSY | 1 mM [U-99% 13C; U-99% 15N] CbnY, 50 % D trifluoroethanol, 50 % water, 0.01 % DSS | trifluoroethanol/water | 0 | 6 | 760 mmHg | 300 | Varian VNMRS 700 |
7 | 3D 1H-15N TOCSY | 1 mM [U-99% 13C; U-99% 15N] CbnY, 50 % D trifluoroethanol, 50 % water, 0.01 % DSS | trifluoroethanol/water | 0 | 6 | 760 mmHg | 300 | Varian VNMRS 700 |
6 | 3D 1H-15N NOESY | 1 mM [U-99% 13C; U-99% 15N] CbnY, 50 % D trifluoroethanol, 50 % water, 0.01 % DSS | trifluoroethanol/water | 0 | 6 | 760 mmHg | 300 | Varian VNMRS 700 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | VNMRS | 700 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | NMRView | Johnson, One Moon Scientific | |
4 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |