5XI9
Solution structure for human HSP70 substrate binding domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCO | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
2 | 3D HN(CA)CO | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
3 | 3D HNCA | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
4 | 3D HN(CO)CA | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
5 | 3D CBCA(CO)NH | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
6 | 3D HNCACB | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
7 | 3D C(CO)NH | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
8 | 3D HBHA(CO)NH | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
9 | 3D HCCH-TOCSY | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
10 | 3D CCH-TOCSY | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
11 | 3D HCCH-COSY | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
12 | 3D 1H-15N NOESY | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
13 | 3D 1H-13C NOESY | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
14 | 2D 1H-15N HSQC | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
15 | 2D 1H-13C HSQC | 50 mM potassium phosphate, 50 mM potassium chloride, 10 mM DTT | 94% H2O/6% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE II 700 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE II | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | MAGRO | Kobayashi, N. | |
4 | data analysis | NMRView | Johnson, One Moon Scientific | |
5 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
6 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |