5KRP

Frutapin, a lectin from Artocarpus incisa: Cloning, Expressing and Structural Analysis.

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4AKD

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		277	Potassium phosphate monobasic, PEG 8000, Glycerol

Crystal Properties
Matthews coefficient	Solvent content
2.37	48.12

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 67.5	α = 90
b = 93.68	β = 90
c = 97.74	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2016-02-27	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I02	0.97949	Diamond	I02

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.58	47.77	99.8	0.118	0.996	8.6	6.9		85305

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.58	1.62	99.8		0.118	1	8.6	6.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	4AKD	1.58	38.48	81218	4087	99.82	0.1649	0.16312	0.18	0.19952	0.21	RANDOM	23.793

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.58			-1.57		2.15

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.788
r_dihedral_angle_4_deg	16.015
r_dihedral_angle_3_deg	12.351
r_dihedral_angle_1_deg	7.007
r_long_range_B_refined	6.673
r_long_range_B_other	6.672
r_scangle_other	4.948
r_scbond_it	3.368
r_scbond_other	3.367
r_mcangle_other	2.952
r_mcangle_it	2.951
r_mcbond_it	2.054
r_mcbond_other	2.053
r_angle_refined_deg	1.948
r_angle_other_deg	1.194
r_chiral_restr	0.265
r_bond_refined_d	0.02
r_gen_planes_refined	0.011
r_bond_other_d	0.004
r_gen_planes_other	0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4605
Nucleic Acid Atoms
Solvent Atoms	611
Heterogen Atoms	78

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data scaling
xia2	data reduction
Aimless	data scaling
PHASER	phasing