6RS3
2'-F-riboguanosine modified G-quadruplex with V-loop
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 1.0 mM F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 313 | Bruker AVANCE III 600 |
2 | 2D 1H-1H NOESY | 1.0 mM F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
3 | 2D 1H-13C HSQC aromatic | 1.0 mM F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 313 | Bruker AVANCE III 600 |
4 | 2D 1H-13C HSQC aromatic | 1.0 mM F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
5 | 2D DQF-COSY | 1.0 mM F1415 | 100% D2O | 15 mM | 7 | 1 atm | 313 | Bruker AVANCE III 600 |
6 | 2D 1H-13C HMBC | 1.0 mM F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 313 | Bruker AVANCE III 600 |
7 | 2D 1H-13C HMBC | 1.0 mM F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
8 | 2D 1H-1H NOESY | 1.0 mM F1415 | 100% D2O | 15 mM | 7 | 1 atm | 313 | Bruker AVANCE III 600 |
9 | 1D 1H-15N HMBC | 0.2 mM 15N 10% G1 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
10 | 1D 1H-15N HMBC | 0.2 mM 15N 10% G2 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
11 | 1D 1H-15N HMBC | 0.2 mM 15N 10% G3 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
12 | 1D 1H-15N HMBC | 0.2 mM 15N 10% G6 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
13 | 1D 1H-15N HMBC | 0.2 mM 15N 10% G17 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
14 | 1D 1H-15N HMBC | 0.2 mM 15N 10% G8 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
15 | 1D 1H-15N HMBC | 0.2 mM 15N 10% G16 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
16 | 1D 1H-15N HMBC | 0.2 mM 15N 10% G17 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
17 | 1D 1H-15N HMBC | 0.2 mM 15N 10% G20 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
18 | 1D 1H-15N HMBC | 0.2 mM 15N 10% G21 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
19 | 1D 1H-15N HMBC | 0.2 mM 15N 10% A9 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
20 | 1D 1H-15N HMBC | 0.2 mM 15N 10% A9 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 313 | Bruker AVANCE III 600 |
21 | 1D 1H-15N HMBC | 0.2 mM 15N 10% A11 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
22 | 1D 1H-15N HMBC | 0.2 mM 15N 10% A11 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 313 | Bruker AVANCE III 600 |
23 | 1D 1H-15N HMBC | 0.2 mM 15N 10% A13 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
24 | 1D 1H-15N HMBC | 0.2 mM 15N 10% A13 F1415 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 313 | Bruker AVANCE III 600 |
25 | 2D 1H-13C HSQC aromatic | 0.4 mM F1415(10MeC) | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
26 | 2D 1H-13C HSQC aromatic | 0.4 mM F1415(10MeC) | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 313 | Bruker AVANCE III 600 |
27 | 2D 1H-13C HSQC aromatic | 0.4 mM F1415(12MeC) | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
28 | 2D 1H-13C HSQC aromatic | 0.4 mM F1415(12MeC) | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 313 | Bruker AVANCE III 600 |
29 | 2D DQF-COSY | 0.4 mM F1415(10MeC) | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
30 | 2D DQF-COSY | 0.4 mM F1415(10MeC) | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 313 | Bruker AVANCE III 600 |
31 | 2D DQF-COSY | 0.4 mM F1415(12MeC) | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE III 600 |
32 | 2D DQF-COSY | 0.4 mM F1415(12MeC) | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 313 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Xplor-NIH | |
molecular dynamics | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | TopSpin | 4.0.4 | Bruker Biospin |
2 | chemical shift assignment | CcpNmr Analysis | 2.4.2 | CCPN |
3 | structure calculation | Xplor-NIH | 2.49 | Schwieters, Kuszewski, Tjandra and Clore |
4 | structure calculation | Amber | 16 | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |