6AMV
Abl 1b Regulatory Module 'inhibiting state'
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D CBCA(CO)NH | 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 5 mM beta-mercaptoethanol, 100 mM potassium chloride, 0.05 % sodium azide | 90% H2O/10% D2O | 0.2 M | 7.0 | 1 atm | 298 | Bruker AVANCE III 850 |
2 | 3D HNCACB | 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 5 mM beta-mercaptoethanol, 100 mM potassium chloride, 0.05 % sodium azide | 90% H2O/10% D2O | 0.2 M | 7.0 | 1 atm | 298 | Bruker AVANCE III 700 |
3 | 2D 1H-13C HSQC aliphatic | 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 5 mM beta-mercaptoethanol, 100 mM potassium chloride, 0.05 % sodium azide | 90% H2O/10% D2O | 0.2 M | 7.0 | 1 atm | 298 | Bruker AVANCE III 850 |
4 | 3D 1H-15N NOESY | 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 5 mM beta-mercaptoethanol, 100 mM potassium chloride, 0.05 % sodium azide | 90% H2O/10% D2O | 0.2 M | 7.0 | 1 atm | 298 | Bruker AVANCE III 850 |
5 | 3D 1H-13C NOESY aliphatic | 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 5 mM beta-mercaptoethanol, 100 mM potassium chloride, 0.05 % sodium azide | 90% H2O/10% D2O | 0.2 M | 7.0 | 1 atm | 298 | Bruker AVANCE III 850 |
6 | 3D 1H-13C NOESY aromatic | 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 5 mM beta-mercaptoethanol, 100 mM potassium chloride, 0.05 % sodium azide | 90% H2O/10% D2O | 0.2 M | 7.0 | 1 atm | 298 | Bruker AVANCE III 850 |
7 | 2D 1H-15N HSQC | 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 5 mM beta-mercaptoethanol, 100 mM potassium chloride, 0.05 % sodium azide | 90% H2O/10% D2O | 0.2 M | 7.0 | 1 atm | 298 | Bruker AVANCE III 850 |
8 | 3D HNCO | 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 5 mM beta-mercaptoethanol, 100 mM potassium chloride, 0.05 % sodium azide | 90% H2O/10% D2O | 0.2 M | 7.0 | 1 atm | 298 | Bruker AVANCE III 700 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 850 |
2 | Bruker | AVANCE III | 700 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | lowest target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 1.3 | Brunger, Adams, Clore, Gros, Nilges and Read |
2 | structure calculation | CYANA | 3.97 | Guntert, Mumenthaler and Wuthrich |
3 | chemical shift assignment | PINE | Bahrami, Markley, Assadi, and Eghbalnia | |
4 | peak picking | Sparky | Goddard | |
5 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax |