6AXD
Structures of REV1 UBM2 domain complex with ubiquitin and with the first small-molecule that inhibits the REV1 UBM2-ubiquitin interaction
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-99% 15N] REV1 UBM2, 20mM sodium phosphate, 100 mM NacL, pH 7.0 | 90% H2O/10% D2O | 0.5 mM | 7.0 | 1 mbar | 298 | Bruker AVANCE 600 |
2 | 3D HNCA | 0.5 mM [U-13C; U-15N] REV1 UBM2, 20mM sodium phosphate, 100 mM NacL, pH 7.0 | 90% H2O/10% D2O | 0.5 mM | 7.0 | 1 mbar | 298 | Bruker AVANCE 600 |
3 | 3D HNCACB | 0.5 mM [U-13C; U-15N] REV1 UBM2, 20mM sodium phosphate, 100 mM NacL, pH 7.0 | 90% H2O/10% D2O | 0.5 mM | 7.0 | 1 mbar | 298 | Bruker AVANCE 600 |
4 | 3D HCCH-TOCSY | 0.5 mM [U-13C; U-15N] REV1 UBM2, 20mM sodium phosphate, 100 mM NacL, pH 7.0 | 90% H2O/10% D2O | 0.5 mM | 7.0 | 1 mbar | 298 | Bruker AVANCE 800 |
5 | 3D 1H-15N NOESY | 0.5 mM [U-99% 15N] REV1 UBM2, 20mM sodium phosphate, 100 mM NacL, pH 7.0 | 90% H2O/10% D2O | 0.5 mM | 7.0 | 1 mbar | 298 | Bruker AVANCE 600 |
6 | 2D 1H-13C HSQC | 0.5 mM [U-13C; U-15N] REV1 UBM2, 20mM sodium phosphate, 100 mM NacL, pH 7.0 | 90% H2O/10% D2O | 0.5 mM | 7.0 | 1 mbar | 298 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | 2.1 | |
2 | structure solution | CYANA | 2.1 |