6KN4
HUMAN PARALLEL STRANDED 7-MER G-QUADRUPLEX COMPLEXED WITH 2 ADRIAMYCIN (DM2) MOLECULES
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
5 | 2D 1H-1H NOESY | 1.16 mM DNA (5'-D(*TP*TP*AP*GP*GP*GP*T)-3') | 90% H2O/10% D2O | 100 mM | 7.4 | 1 atm | 298 | Bruker AVANCE II 500 |
6 | 1D | 1.16 mM DNA (5'-D(*TP*TP*AP*GP*GP*GP*T)-3') | 90% H2O/10% D2O | 100 mM | 7.4 | 1 atm | 298 | Bruker AVANCE II 500 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE II | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 16 |
Conformers Submitted Total Number | 8 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 16 | CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN |
2 | structure solution | TopSpin |