Ligand validation:3AKD

CDP: CYTIDINE-5'-DIPHOSPHATE

CDP is a Ligand Of Interest in 3AKD designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
3AKD_CDP_A_209	81%	7%	0.095	0.948	2.98	1.96	12	8	1	0	100%	1
3AKC_CDP_A_209	40%	2%	0.199	0.91	3.11	3.82	11	17	0	0	100%	1
6SDK_CDP_C_301	100%	5%	0.043	0.987	3.72	1.58	12	6	0	0	100%	1
3BOS_CDP_B_300	100%	55%	0.046	0.988	0.92	0.81	1	1	0	0	100%	1
8VHP_CDP_D_809	98%	52%	0.051	0.975	0.89	0.96	-	2	2	0	100%	1
2VBU_CDP_A_1133	96%	45%	0.078	0.989	0.89	1.22	-	3	0	0	100%	1
1ORR_CDP_B_1301	96%	34%	0.06	0.97	1.28	1.32	3	6	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.