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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 2.7.11.1

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Search Summary

This query matches 9,865 Structures.

Refinements

Structure Determination Methodology

	computational (5,655)
	experimental (4,210)

CSM Source Database

	AlphaFoldDB (5,589)
	ModelArchive (66)

pLDDT Global Quality Score

	< 50.0 (130)
	50.0 - 70.0 (1,384)
	70.0 - 90.0 (3,757)
	> 90.0 (384)

Scientific Name of Source Organism

	Homo sapiens (3,978)
	Arabidopsis thaliana (745)
	Glycine max (627)
	Zea mays (435)
	Oryza sativa Japonica Group (420)
	Mus musculus (381)
	Rattus norvegicus (280)
	Dictyostelium discoideum (195)
	Saccharomyces cerevisiae S288C (150)
	Caenorhabditis elegans (144)

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Taxonomy

	Eukaryota (9,414)
	Bacteria (416)
	other sequences (69)
	Archaea (50)
	Eukaryota (eukaryotes) (30)
	Riboviria (9)
	Duplodnaviria (7)
	Varidnaviria (3)
	Riboviria (RNA viruses and viroids) (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (3,729)
	ELECTRON MICROSCOPY (356)
	SOLUTION NMR (121)
	SOLID-STATE NMR (4)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

	Protein (9,865)
	DNA (59)
	RNA (39)

Refinement Resolution (Å)

	0.5 - 1.0 (10)
	1.0 - 1.5 (165)
	1.5 - 2.0 (931)
	2.0 - 2.5 (1,262)
	2.5 - 3.0 (1,003)
	3.0 - 3.5 (429)
	3.5 - 4.0 (160)
	4.0 - 4.5 (51)
	> 4.5 (75)

Release Date

	1995 - 1999 (39)
	2000 - 2004 (164)
	2005 - 2009 (507)
	2010 - 2014 (1,001)
	2015 - 2019 (1,183)
	2020 - 2024 (6,933)
	2025 - 2029 (38)

Enzyme Classification Name

	Transferases (9,865)
	Hydrolases (370)
	Isomerases (43)
	Lyases (34)
	Ligases (12)
	Oxidoreductases (4)

Membrane Protein Annotation

	mpstruc (25)
	PDBTM (23)
	OPM (23)
	MemProtMD (7)

Symmetry Type

	Asymmetric (9,127)
	Cyclic (839)
	Dihedral (90)
	Tetrahedral (8)
	Helical (5)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (1,991)
	Artifacts (384)
	All beta proteins (211)
	All alpha proteins (213)
	Alpha and beta proteins (a/b) (99)
	Small proteins (8)
	Coiled coil proteins (4)
	Peptides (3)

AllSelected

1 to 25 of 9,865 Structures

Page 1 of 395

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1A49	Download File View File

BIS MG-ATP-K-OXALATE COMPLEX OF PYRUVATE KINASE

Larsen, T.M., Benning, M.M., Rayment, I., Reed, G.H.

(1998) Biochemistry 37: 6247-6255

Released	1999-04-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PYRUVATE KINASE (protein)
Unique Ligands	ATP, K, MG, OXL

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1A5U	Download File View File

PYRUVATE KINASE COMPLEX WITH BIS MG-ATP-NA-OXALATE

Larsen, T.M., Benning, M.M., Rayment, I., Reed, G.H.

(1998) Biochemistry 37: 6247-6255

Released	1999-03-02
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PYRUVATE KINASE (protein)
Unique Ligands	ATP, MG, NA, OXL

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1AQF	Download File View File

PYRUVATE KINASE FROM RABBIT MUSCLE WITH MG, K, AND L-PHOSPHOLACTATE

Larsen, T.M., Benning, M.M., Wesenberg, G.E., Rayment, I., Reed, G.H.

(1997) Arch Biochem Biophys 345: 199-206

Released	1998-09-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PYRUVATE KINASE (protein)
Unique Ligands	K, MG, PEQ

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1AUE	Download File View File

FKBP-RAPAMYCIN BINDING DOMAIN (FRB) OF THE FKBP-RAPAMYCIN ASSOCIATED PROTEIN

Odagaki, Y., Clardy, J.

(1997) J Am Chem Soc 119: 10253-10254

Released	1998-10-28
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Homo sapiens
Macromolecule	FKBP-RAPAMYCIN ASSOCIATED PROTEIN (protein)

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1BPV	Download File View File

TITIN MODULE A71 FROM HUMAN CARDIAC MUSCLE, NMR, 50 STRUCTURES

Muhle-Goll, C., Pastore, A., Nilges, M.

(1998) Structure 6: 1291-1302

Released	1999-08-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TITIN (protein)

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1C1Y	Download File View File

CRYSTAL STRUCTURE OF RAP.GMPPNP IN COMPLEX WITH THE RAS-BINDING-DOMAIN OF C-RAF1 KINASE (RAFRBD).

Nassar, N.

(1995) Nature 375: 554-560

Released	1999-08-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTO-ONCOGENE SERINE/THREONINE PROTEIN KINASE RAF-1 (protein) RAS-RELATED PROTEIN RAP-1A (protein)
Unique Ligands	CA, GTP, MG

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1CF4	Download File View File

CDC42/ACK GTPASE-BINDING DOMAIN COMPLEX

Mott, H.R., Owen, D., Nietlispach, D., Lowe, P.N., Lim, L., Laue, E.D.

(1999) Nature 399: 384-388

Released	1999-06-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (ACTIVATED P21CDC42HS KINASE) (protein) PROTEIN (CDC42 HOMOLOG) (protein)
Unique Ligands	GNP, MG

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1CJA	Download File View File

ACTIN-FRAGMIN KINASE, CATALYTIC DOMAIN FROM PHYSARUM POLYCEPHALUM

Steinbacher, S., Hof, P., Eichinger, L., Schleicher, M., Gettemans, J., Vandekerckhove, J., Huber, R., Benz, J.

(1999) EMBO J 18: 2923-2929

Released	1999-06-18
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Physarum polycephalum
Macromolecule	PROTEIN (ACTIN-FRAGMIN KINASE) (protein)
Unique Ligands	AMP

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1CKI	Download File View File

RECOMBINANT CASEIN KINASE I DELTA TRUNCATION MUTANT CONTAINING RESIDUES 1-317

Longenecker, K.L., Roach, P.J., Hurley, T.D.

(1996) J Mol Biol 257: 618-631

Released	1995-12-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	CASEIN KINASE I DELTA (protein)

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1CKJ	Download File View File

CASEIN KINASE I DELTA TRUNCATION MUTANT CONTAINING RESIDUES 1-317 COMPLEX WITH BOUND TUNGSTATE

Longenecker, K.L., Roach, P.J., Hurley, T.D.

(1996) J Mol Biol 257: 618-631

Released	1995-12-07
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Rattus norvegicus
Macromolecule	RECOMBINANT CASEIN KINASE I DELTA (protein)
Unique Ligands	WO4

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1CSN	Download File View File

BINARY COMPLEX OF CASEIN KINASE-1 WITH MGATP

Xu, R.-M., Cheng, X.

(1995) EMBO J 14: 1015-1023

Released	1995-07-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	CASEIN KINASE-1 (protein)
Unique Ligands	ATP, MG, SO4

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1D2Z	Download File View File

THREE-DIMENSIONAL STRUCTURE OF A COMPLEX BETWEEN THE DEATH DOMAINS OF PELLE AND TUBE

Xiao, T., Towb, P., Wasserman, S.A., Sprang, S.R.

(1999) Cell 99: 545-555

Released	1999-11-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	DEATH DOMAIN OF PELLE (protein) DEATH DOMAIN OF TUBE (protein)
Unique Ligands	EPE

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1DAW	Download File View File

CRYSTAL STRUCTURE OF A BINARY COMPLEX OF PROTEIN KINASE CK2 (ALPHA-SUBUNIT) AND MG-AMPPNP

Niefind, K., Puetter, M., Guerra, B., Issinger, O.G., Schomburg, D.

(1999) Nat Struct Biol 6: 1100-1103

Released	2000-05-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Zea mays
Macromolecule	PROTEIN KINASE CK2 (protein)
Unique Ligands	ANP, MG

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1DAY	Download File View File

CRYSTAL STRUCTURE OF A BINARY COMPLEX OF PROTEIN KINASE CK2 (ALPHA-SUBUNIT) AND MG-GMPPNP

Niefind, K., Puetter, M., Guerra, B., Issinger, O.G., Schomburg, D.

(1999) Nat Struct Biol 6: 1100-1103

Released	2000-05-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Zea mays
Macromolecule	PROTEIN KINASE CK2 (protein)
Unique Ligands	GNP, MG

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1DS5	Download File View File

DIMERIC CRYSTAL STRUCTURE OF THE ALPHA SUBUNIT IN COMPLEX WITH TWO BETA PEPTIDES MIMICKING THE ARCHITECTURE OF THE TETRAMERIC PROTEIN KINASE CK2 HOLOENZYME.

Battistutta, R., Sarno, S., De Moliner, E., Marin, O., Zanotti, G., Pinna, L.A.

(2000) Eur J Biochem 267: 5184-5190

Released	2001-01-07
Method	X-RAY DIFFRACTION 3.16 Å
Organisms	Homo sapiens Zea mays
Macromolecule	CASEIN KINASE, ALPHA CHAIN (protein) CASEIN KINASE, BETA CHAIN (protein)
Unique Ligands	AMP, MG

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1E0A	Download File View File

Cdc42 complexed with the GTPase binding domain of p21 activated kinase

Morreale, A., Venkatesan, M., Mott, H.R., Owen, D., Nietlispach, D., Lowe, P.N., Laue, E.D.

(2000) Nat Struct Biol 7: 384

Released	2000-04-18
Method	SOLUTION NMR
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Cell division control protein 42 homolog (protein) Serine/threonine-protein kinase PAK 1 (protein)
Unique Ligands	GNP, MG

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1E7U	Download File View File

Structure determinants of phosphoinositide 3-kinase inhibition by wortmannin, LY294002, quercetin, myricetin and staurosporine

Walker, E.H., Perisic, O., Ried, C., Stephens, L., Williams, R.L.

(2000) Mol Cell 6: 909

Released	2000-11-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sus scrofa
Macromolecule	PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT (protein)
Unique Ligands	KWT

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1E7V	Download File View File

Structure determinants of phosphoinositide 3-kinase inhibition by wortmannin, LY294002, quercetin, myricetin and staurosporine

Walker, E.H., Pacold, M.E., Perisic, O., Stephens, L., Hawkins, P.T., Wymann, M.P., Williams, R.L.

(2000) Mol Cell 6: 909-919

Released	2000-11-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Sus scrofa
Macromolecule	PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT (protein)
Unique Ligands	LY2

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1E8W	Download File View File

Structure determinants of phosphoinositide 3-kinase inhibition by wortmannin, LY294002, quercetin, myricetin and staurosporine

Walker, E.H., Pacold, M.E., Perisic, O., Stephens, L., Hawkins, P.T., Wymann, M.P., Williams, R.L.

(2000) Mol Cell 6: 909

Released	2000-11-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Sus scrofa
Macromolecule	PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT (protein)
Unique Ligands	QUE

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1E8X	Download File View File

STRUCTURAL INSIGHTS INTO PHOSHOINOSITIDE 3-KINASE ENZYMATIC MECHANISM AND SIGNALLING

Walker, E.H., Perisic, O., Ried, C., Stephens, L., Williams, R.L.

(2000) Mol Cell 6: 909

Released	2000-10-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Sus scrofa
Macromolecule	PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT (protein)
Unique Ligands	ATP, LU

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1E8Y	Download File View File

Structure determinants of phosphoinositide 3-kinase inhibition by wortmannin, LY294002, quercetin, myricetin and staurosporine

Walker, E.H., Pacold, M.E., Perisic, O., Stephens, L., Hawkins, P.T., Wymann, M.P., Williams, R.L.

(2000) Mol Cell 6: 909

Released	2000-11-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT (protein)

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1E8Z	Download File View File

Structure determinants of phosphoinositide 3-kinase inhibition by wortmannin, LY294002, quercetin, myricetin and staurosporine

Walker, E.H., Pacold, M.E., Perisic, O., Stephens, L., Hawkins, P.T., Wymann, M.P., Williams, R.L.

(2000) Mol Cell 6: 909

Released	2000-11-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT (protein)
Unique Ligands	STU

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1E90	Download File View File

Structure determinants of phosphoinositide 3-kinase inhibition by wortmannin, LY294002, quercetin, myricetin and staurosporine

Walker, E.H., Pacold, M.E., Perisic, O., Stephens, L., Hawkins, P.T., Wymann, M.P., Williams, R.L.

(2000) Mol Cell 6: 909

Released	2000-11-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Sus scrofa
Macromolecule	PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT (protein)
Unique Ligands	MYC