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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Botte, M."

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Search Summary

This query matches 460 Structures.

Refinements

Structure Determination Methodology

experimental (460)

Scientific Name of Source Organism

	Homo sapiens (126)
	synthetic construct (58)
	Saccharomyces cerevisiae S288C (42)
	Saccharomyces cerevisiae (25)
	Escherichia coli (19)
	Bacillus subtilis (13)
	Influenza A virus (9)
	Gallus gallus (7)
	Salasvirus phi29 (7)
	Escherichia phage T7 (6)

More...

Taxonomy

	Eukaryota (225)
	Bacteria (196)
	other sequences (60)
	Archaea (17)
	Duplodnaviria (15)
	Riboviria (12)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (359)
	SOLUTION NMR (59)
	ELECTRON MICROSCOPY (42)

Polymer Entity Type

	Protein (458)
	DNA (77)
	RNA (65)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (108)
	2.0 - 2.5 (96)
	2.5 - 3.0 (81)
	3.0 - 3.5 (55)
	3.5 - 4.0 (40)
	4.0 - 4.5 (8)
	> 4.5 (5)

Release Date

	1985 - 1989 (1)
	2005 - 2009 (146)
	2010 - 2014 (116)
	2015 - 2019 (106)
	2020 - 2024 (91)

Enzyme Classification Name

	Transferases (105)
	Hydrolases (78)
	Oxidoreductases (18)
	Lyases (8)
	Isomerases (2)

Membrane Protein Annotation

	PDBTM (43)
	mpstruc (27)
	MemProtMD (25)
	OPM (23)

Symmetry Type

	Asymmetric (308)
	Cyclic (143)
	Dihedral (24)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (87)
	All beta proteins (58)
	Artifacts (45)
	All alpha proteins (33)
	Alpha and beta proteins (a/b) (29)
	Multi-domain proteins (alpha and beta) (11)
	Small proteins (11)
	Coiled coil proteins (10)
	Low resolution protein structures (1)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 460 Structures

Page 1 of 19

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1S9K	Download File View File

Crystal Structure of Human NFAT1 and Fos-Jun on the IL-2 ARRE1 Site

Wang, D., Stroud, J.C., Chen, L.

To be published

Released	2005-06-14
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Nuclear factor of activated T-cells, cytoplasmic 2 (protein) Proto-oncogene protein c-fos (protein) Transcription factor AP-1 (protein) Human IL-2 ARRE1 Promoter Element, Minus Strand (nucleic acid) Human IL-2 ARRE1 Promoter Element, Plus Strand (nucleic acid)

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1W24	Download File View File

Crystal Structure Of human Vps29

Wang, D., Guo, M., Teng, M., Niu, L.

(2005) J Biol Chem 280: 22962

Released	2005-03-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	VACUOLAR PROTEIN SORTING PROTEIN 29 (protein)

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2CGA	Download File View File

BOVINE CHYMOTRYPSINOGEN A. X-RAY CRYSTAL STRUCTURE ANALYSIS AND REFINEMENT OF A NEW CRYSTAL FORM AT 1.8 ANGSTROMS RESOLUTION

Wang, D., Bode, W., Huber, R.

(1985) J Mol Biol 185: 595-624

Released	1987-04-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	CHYMOTRYPSINOGEN A (protein)

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2DSM	Download File View File

NMR Structure of Bacillus Subtilis Protein YqaI, Northeast Structural Genomics Target SR450

Ramelot, T.A., Cort, J.R., Wang, D., Janua, H., Cunningham, K., Ma, L.C., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-08-26
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	Hypothetical protein yqaI (protein)

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2E2H	Download File View File

RNA polymerase II elongation complex at 5 mM Mg2+ with GTP

Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.

(2006) Cell 127: 941-954

Released	2006-12-12
Method	X-RAY DIFFRACTION 3.95 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

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2E2I	Download File View File

RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP

Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.

(2006) Cell 127: 941-954

Released	2006-12-19
Method	X-RAY DIFFRACTION 3.41 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	DGT, MG, ZN

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2E2J	Download File View File

RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP

Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.

(2006) Cell 127: 941-954

Released	2006-12-12
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	G2P, MG, ZN

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2GF4	Download File View File

Crystal structure of Vng1086c from Halobacterium salinarium (Halobacterium halobium). Northeast Structural Genomics Target HsR14

Benach, J., Zhou, W., Jayaraman, S., Forouhar, F.F., Janjua, H., Xiao, R., Ma, L.-C., Cunningham, K., Wang, D., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Protein Vng1086c (protein)
Unique Ligands	ACT, CA

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2GO8	Download File View File

Crystal structure of YQJZ_BACSU FROM Bacillus subtilis. Northeast structural genomics TARGET SR435

Benach, J., Su, M., Jayaraman, S., Fang, Y., Xiao, R., Ma, L.-C., Cunningham, K., Wang, D., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-04-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	Hypothetical protein yqjZ (protein)

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2GSV	Download File View File

X-Ray Crystal Structure of Protein YvfG from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR478.

Forouhar, F., Su, M., Jayaraman, S., Wang, D., Fang, Y., Cunningham, K., Conover, K., Ma, L.-C., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-05-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	Hypothetical protein yvfG (protein)
Unique Ligands	SO4

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2GTA	Download File View File

Crystal Structure of the putative pyrophosphatase YPJD from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR428.

Vorobiev, S.M., Zhou, W., Seetharaman, J., Wang, D., Ma, L.C., Acton, T., Xio, R., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacillus subtilis
Macromolecule	Hypothetical protein ypjD (protein)
Unique Ligands	NA

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2GZX	Download File View File

Crystal Structure of the TatD deoxyribonuclease MW0446 from Staphylococcus aureus. Northeast Structural Genomics Consortium Target ZR237.

Vorobiev, S.M., Neely, H., Seetharaman, J., Wang, D., Fang, Y., Xiao, R., Acton, T., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-07-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus subsp. aureus MW2
Macromolecule	putative TatD related DNase (protein)
Unique Ligands	NI

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2HC5	Download File View File

Solution NMR Structure of Protein yvyC from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR482.

Eletsky, A., Liu, G., Atreya, H.S., Sukumaran, D.K., Wang, D., Cunningham, K., Janjua, H., Ma, L.-C., Xiao, R., Liu, J., Baran, M., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

(2009) Proteins 76: 1037-1041

Released	2006-08-15
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	Hypothetical protein yvyC (protein)

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2HEQ	Download File View File

NMR Structure of Bacillus subtilis protein YorP, Northeast Structural Genomics Target SR399.

Ramelot, T.A., Cort, J.R., Wang, D., Janjua, H., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.M., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-08-15
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	YorP protein (protein)

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2HGK	Download File View File

Solution NMR Structure of protein YqcC from E. coli: Northeast Structural Genomics Consortium target ER225

Cort, J.R., Wang, D., Shetty, K., Cunningham, K., Ma, L.C., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2007-06-05
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Hypothetical protein yqcC (protein)

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2HJQ	Download File View File

NMR Structure of Bacillus Subtilis Protein YqbF, Northeast Structural Genomics Target SR449

Ding, K., Ramelot, T.A., Cort, J.R., Wang, D., Janjua, H., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2007-06-05
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	Hypothetical protein yqbF (protein)

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2INW	Download File View File

Crystal structure of Q83JN9 from Shigella flexneri at high resolution. Northeast Structural Genomics Consortium target SfR137.

Kuzin, A.P., Su, M., Jayaraman, S., Vorobiev, S.M., Wang, D., Jiang, M., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

(2010) Structure 18: 996-1010

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Shigella flexneri
Macromolecule	Putative structural protein (protein)
Unique Ligands	PO4

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2J1R	Download File View File

Structure of a Streptococcus pneumoniae fucose binding module

Boraston, A.B., Wang, D., Burke, R.D.

(2006) J Biol Chem 281: 35263

Released	2006-09-06
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	FUCOLECTIN-RELATED PROTEIN (protein)
Unique Ligands	CA

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2J1S	Download File View File

Structure of a Streptococcus pneumoniae fucose binding module in complex with fucose

Boraston, A.B., Wang, D., Burke, R.D.

(2006) J Biol Chem 281: 35263

Released	2006-09-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	FUCOLECTIN-RELATED PROTEIN (protein)
Unique Ligands	CA, FUL

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2J1T	Download File View File

Structure of a Streptococcus pneumoniae fucose binding module in complex with the Lewis Y antigen

Boraston, A.B., Wang, D., Burke, R.D.

(2006) J Biol Chem 281: 35263

Released	2006-09-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	FUCOLECTIN-RELATED PROTEIN (protein)
Unique Ligands	CA
Unique branched monosaccharides	FUC, GAL, NAG

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2J1U	Download File View File

Structure of a Streptococcus pneumoniae fucose binding module in complex with the blood group A-tetrasaccharide

Boraston, A.B., Wang, D., Burke, R.D.

(2006) J Biol Chem 281: 35263

Released	2006-09-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	FUCOLECTIN-RELATED PROTEIN (protein)
Unique Ligands	CA
Unique branched monosaccharides	A2G, BGC, FUC, GAL

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2J1V	Download File View File

Structure of a Streptococcus pneumoniae fucose binding module in complex with the blood group H-trisaccharide

Boraston, A.B., Wang, D., Burke, R.D.

(2006) J Biol Chem 281: 35263

Released	2006-09-06
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	FUCOLECTIN-RELATED PROTEIN (protein)
Unique Ligands	CA
Unique branched monosaccharides	FUC, GAL, NAG

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2J22	Download File View File

Structure of a Streptococcus pneumoniae fucose binding module, SpX-3

Boraston, A.B., Wang, D., Burke, R.D.

(2006) J Biol Chem 281: 35263

Released	2006-09-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	FUCOLECTIN-RELATED PROTEIN (protein)
Unique Ligands	CA, GOL

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2J43	Download File View File

Alpha-glucan recognition by family 41 carbohydrate-binding modules from streptococcal virulence factors

Lammerts van Bueren, A., Higgins, M., Wang, D., Burke, R.D., Boraston, A.B.

(2007) Nat Struct Mol Biol 14: 76

Released	2006-12-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus pyogenes
Macromolecule	SPYDX (protein)

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2J44	Download File View File

Alpha-glucan binding by a streptococcal virulence factor

Lammerts van Bueren, A., Higgins, M., Wang, D., Burke, R.D., Boraston, A.B.

(2007) Nat Struct Mol Biol 14: 76

Released	2006-12-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptococcus pneumoniae
Macromolecule	ALKALINE AMYLOPULLULANASE (protein)
Unique Ligands	ZN
Unique branched monosaccharides	GLC