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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Eoff, R.L."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Saccharolobus solfataricus P2 (15)
	Homo sapiens (3)
	synthetic construct (2)
	Saccharolobus solfataricus (1)

Taxonomy

	Archaea (16)
	Eukaryota (3)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (19)

Polymer Entity Type

	DNA (19)
	Protein (19)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (5)
	2.5 - 3.0 (11)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (14)
	2010 - 2014 (5)

Enzyme Classification Name

Transferases (19)

Symmetry Type

Asymmetric (19)

SCOP Classification

	Alpha and beta proteins (a+b) (17)
	Multi-domain proteins (alpha and beta) (17)
	Artifacts (9)

AllSelected

1 to 19 of 19 Structures

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2J6S	Download File View File

Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.

Irimia, A., Eoff, R.L., Guengerich, F.P., Egli, M.

(2007) J Biol Chem 282: 1456

Released	2006-11-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAP TPTPCPC)-3' (nucleic acid) 5'-D(TPCPAPTPXPGPAPAPTPCP CPTPTPCPCPCPCPC)-3' (nucleic acid)
Unique Ligands	CA, DTP

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2J6T	Download File View File

Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.

Irimia, A., Eoff, R.L., Guengerich, F.P., Egli, M.

(2007) J Biol Chem 282: 1456

Released	2006-11-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAP TPTPC)-3' (nucleic acid) 5'-D(TPCPAPTPXPGPAPAPTPCP CPTPTPCPCPCPCP*C)-3' (nucleic acid)
Unique Ligands	CA, DTP

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2J6U	Download File View File

Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dGTP.

Eoff, R.L., Irimia, A., Guengerich, F.P., Egli, M.

(2007) J Biol Chem 282: 1456

Released	2006-11-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharolobus solfataricus P2 synthetic construct
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAP TPTPCPT)-3' (nucleic acid) 5'-D(TPCPAPC G32PGPAPAPTPCPCP TPTPCPCPCPCP*C)-3' (nucleic acid)
Unique Ligands	CA, DGT

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2JEF	Download File View File

The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect Pairing

Eoff, R.L., Angel, K.C., Kosekov, I.D., Egli, M., Guengerich, F.P.

(2007) J Biol Chem 282: 13573

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAPTPTPCPDOC)-3' (nucleic acid) 5'-D(TPCPAPCPBZGPGPAPAPTPCPCPTPTPCPCP CPCP*C)-3' (nucleic acid)
Unique Ligands	CA, DGT

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2JEG	Download File View File

The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing

Eoff, R.L., Angel, K.C., Kosekov, I.D., Egli, M., Guengerich, F.P.

(2007) J Biol Chem 282: 13573

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAP TPTPCPDOC)-3' (nucleic acid) 5'-D(TPCPAPC BZGPGPAPAPTPCP CPTPTPCPCPCPCP*C)-3' (nucleic acid)
Unique Ligands	CA, DGT

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2JEI	Download File View File

The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing

Eoff, R.L., Angel, K.C., Kosekov, I.D., Egli, M., Guengerich, F.P.

(2007) J Biol Chem 282: 13573

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAP TPTPCPT)-3' (nucleic acid) 5'-D(TPCPAPC BZGPGPAPAPTPCPCP TPTPCPCPCPCP*C)-3' (nucleic acid)
Unique Ligands	CA, DGT

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2JEJ	Download File View File

The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing

Eoff, R.L., Angel, K.C., Kosekov, I.D., Egli, M., Guengerich, F.P.

(2007) J Biol Chem 282: 13573

Released	2007-03-13
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAP TPTPCPCPG)-3' (nucleic acid) 5'-D(TPCPAPC BZGPGPAPAPTPCPCP TPTPCPCPCPCPC)-3' (nucleic acid)
Unique Ligands	CA, DGT

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2V4Q	Download File View File

Post-insertion complex of the Y-family DNA polymerase Dpo4 with M1dG containing template DNA

Eoff, R.L., Stafford, J.B., Szekely, J., Rizzo, C.J., Egli, M., Guengerich, F.P., Marnett, L.J.

(2009) Biochemistry 48: 7079

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAP TPTPCPC)-3' (nucleic acid) 5'-D(TPCPAPC M1GPGPAPAPTPCPCP TPTPCPCPCPCP*C)-3' (nucleic acid)
Unique Ligands	CA, DGT

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2V4R	Download File View File

Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosine

Eoff, R.L., Stafford, J.B., Szekely, J., Rizzo, C.J., Egli, M., Guengerich, F.P., Marnett, L.J.

(2009) Biochemistry 48: 7079

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharolobus solfataricus P2 synthetic construct
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAPTPTPC)-3' (nucleic acid) 5'-D(TPCPAPCPM1GPGPAPAPTPCPCP TPTPCPCPCPCP*C)-3' (nucleic acid)
Unique Ligands	CA, DGT

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2W8K	Download File View File

Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in syn orientation

Eoff, R.L., Zhang, H., Egli, M., Guengerich, F.P.

(2009) J Biol Chem 284: 3563

Released	2009-01-27
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAP TPTPCPDOC)-3' (nucleic acid) 5'-D(TPCPAPCPN2GPGPAPAPTPCPCP TPTPCPCPCPCPC)-3' (nucleic acid)
Unique Ligands	DGT, MG

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2W8L	Download File View File

Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientation

Eoff, R.L., Zhang, H., Egli, M., Guengerich, F.P.

(2009) J Biol Chem 284: 3563

Released	2009-01-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAP TPTPCPDOC)-3' (nucleic acid) 5'-D(TPCPAPCPN2GPGPAPAPTPCP CPTPTPCPCPCPCPC)-3' (nucleic acid)
Unique Ligands	DGT, MG

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2W9A	Download File View File

Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTP

Eoff, R.L., Zhang, H., Kosekov, I.D., Rizzo, C.J., Egli, M., Guengerich, F.P.

(2009) J Biol Chem 284: 17687

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAP TPTPCPDOC)-3' (nucleic acid) 5'-D(TPCPAPCPO2GPGPAPAPTPCP CPTPTPCPCPCPCPC)-3' (nucleic acid)
Unique Ligands	DGT, MG

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2W9B	Download File View File

Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA

Eoff, R.L., Zhang, H., Kosekov, I.D., Rizzo, C.J., Egli, M., Guengerich, F.P.

(2009) J Biol Chem 284: 17687

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAP TPTPCPDOCP)-3' (nucleic acid) 5'-D(TPCPAPTPM2GPGPAPAPTPCPCP TPTPCPCPCPCPC)-3' (nucleic acid)
Unique Ligands	MG

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2W9C	Download File View File

Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTP

Eoff, R.L., Zhang, H., Kosekov, I.D., Rizzo, C.J., Egli, M., Guengerich, F.P.

(2009) J Biol Chem 284: 17687

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAP TPTPDOCP)-3' (nucleic acid) 5'-D(TPCPAPCPO2GPGPAPAPTPCPCP TPTPCPCPCPCP*C)-3' (nucleic acid)
Unique Ligands	MG, TTP

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4EBC	Download File View File

Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota

Eoff, R.L., Ketkar, A., Banerjee, S.

(2012) J Am Chem Soc 134: 10698-10705

Released	2012-06-13
Method	X-RAY DIFFRACTION 2.901 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(PAPGPGPAPCPCP(DOC))-3' (nucleic acid) 5'-D(PCPTPGPGPGPTPCPCPT)-3' (nucleic acid)
Unique Ligands	0OH, CA, GOL

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4EBD	Download File View File

Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota

Eoff, R.L., Ketkar, A., Banerjee, S.

(2012) J Am Chem Soc 134: 10698-10705

Released	2012-06-13
Method	X-RAY DIFFRACTION 2.571 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(PAPGPGPAPCPCP(DOC))-3' (nucleic acid) 5'-D(PCPTPGPGPGPTPCPCPT)-3' (nucleic acid)
Unique Ligands	0OJ, CA, GOL

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4EBE	Download File View File

Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota

Eoff, R.L., Ketkar, A., Banerjee, S.

(2012) J Am Chem Soc 134: 10698-10705

Released	2012-06-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) 5'-D(PAPGPGPAPCPCP(DOC))-3' (nucleic acid) 5'-D(PCPTPGPGPGPTPCPCPT)-3' (nucleic acid)
Unique Ligands	CA, DTP, GOL

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4GC6	Download File View File

Crystal structure of Dpo4 in complex with N-MC-dAMP opposite dT

Eoff, R.L., Ketkar, A., Banerjee, S., Zafar, M.K.

(2012) Biochemistry 51: 9234-9244

Released	2012-10-24
Method	X-RAY DIFFRACTION 2.895 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPGPGPGPAPAPGPGPAPTPTPCPC)-3') (nucleic acid) DNA (5'-D(TPCPAPTPGPGPAPAPTPCPCPTPTPCPCPCPCPC)-3') (nucleic acid)
Unique Ligands	0OH, CA

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4GC7	Download File View File

Crystal structure of Dpo4 in complex with S-MC-dADP opposite dT

Eoff, R.L., Ketkar, A., Banerjee, S., Zafar, M.K.

(2012) Biochemistry 51: 9234-9244

Released	2012-10-24
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GGPGPGPGPAPAPGPGPAPTPTPCPC)-3') (nucleic acid) DNA (5'-D(TPCPAPTPGPGPAPAPTPCPCPTPTPCPCPCPCPC)-3') (nucleic acid)
Unique Ligands	0OJ, CA

1 to 19 of 19 Structures

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