RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Eritja, R."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	synthetic construct (5)
	Streptococcus agalactiae (3)

Taxonomy

	other sequences (5)
	Bacteria (3)

Experimental Method

	SOLUTION NMR (6)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

	DNA (9)
	Protein (3)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	2.5 - 3.0 (2)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (1)
	2010 - 2014 (1)
	2015 - 2019 (2)
	2020 - 2024 (3)

Symmetry Type

Cyclic (3)

SCOP Classification

All alpha proteins (3)

AllSelected

1 to 10 of 10 Structures

Page 1 of 1

Sort by

Explore in 3D

1B01	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX

Gomis-Rueth, F.X., Sola, M., Acebo, P., Parraga, A., Guasch, A., Eritja, R., Gonzalez, A., Espinosa, M., del Solar, G., Coll, M.

(1998) EMBO J 17: 7404-7415

Released	1999-11-19
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG (protein) DNA (5'-D(CPCPCPGPTPGPCPAPCPTPCPAPAPTPGPCPAPAPT)-3') (nucleic acid) DNA (5'-D(GPAPTPTPGPCPAPTPTPGPAPGPTPGPCPAPCPGPG)-3') (nucleic acid)

Explore in 3D

1EA4	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG/22bp dsDNA COMPLEX

Gomis-Rueth, F.X., Costa, M., Sola, M., Acebo, P., Eritja, R., Espinosa, M., Solar, G.D., Coll, M.

(2001) J Mol Biol 310: 403

Released	2001-07-05
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG (protein) DNA (5'-D(TPAPAPCPCPGPTPGP CPAPCPTPCPAPAPTPGPCPAPAPTPC)-3') (nucleic acid) DNA(5'-D(APGPAPTPTPGPCPAPTP TPGPAPGPTPGPCPAPCPGPGPTPT)-3') (nucleic acid)

Explore in 3D

264D	Download File View File

THREE-DIMENSIONAL CRYSTAL STRUCTURE OF THE A-TRACT DNA DODECAMER D(CGCAAATTTGCG) COMPLEXED WITH THE MINOR-GROOVE-BINDING DRUG HOECHST 33258

Vega, M.C., Garcia-Saez, I., Aymami, J., Eritja, R., Van Der Marel, G.A., Van Boom, J.H., Rich, A., Coll, M.

(1994) Eur J Biochem 222: 721-726

Released	1995-03-31
Method	X-RAY DIFFRACTION 2.44 Å
Macromolecule	DNA (5'-D(CPGPCPAPAPAPTPTPTPGPCPG)-3') (nucleic acid)
Unique Ligands	HT

Explore in 3D

2CPG	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG

Gomis-Rueth, F.X., Sola, M., Acebo, P., Parraga, A., Guasch, A., Eritja, R., Gonzalez, A., Espinosa, M., del Solar, G., Coll, M.

(1998) EMBO J 17: 7404-7415

Released	1999-11-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG (protein)
Unique Ligands	CL

Explore in 3D

2LYG	Download File View File

Fuc_TBA

Gomez-Pinto, I., Vengut-Climent, E., Lucas, R., Avio, A., Eritja, R., Gonzalez-Ibaez, C., Morales, J.

(2013) Chemistry 19: 1920-1927

Released	2014-01-29
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(PGPGPTPTPGPGPTPGPTPGPGPTPTPGP*G)-3') (nucleic acid)
Unique Ligands	1CF

Explore in 3D

2N9F	Download File View File

Glucose as non natural nucleobase

Gomez-Pinto, I., Vengut-Climent, E., Lucas, R., Avino, A., Eritja, R., Gonzalez-Ibanez, C., Morales, J., Penalver, P., Fonseca-Guerra, C., Bickelhaupt, M.

(2016) Angew Chem Int Ed Engl 55: 8643-8647

Released	2016-08-31
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPTPAPGPCPGPGPTPCPAPTPC)-3') (nucleic acid) DNA (5'-D(GPAPTPGPAPCP(4JA)PGPCPTPAPG)-3') (nucleic acid)

Explore in 3D

2N9H	Download File View File

Glucose as a nuclease mimic in DNA

Gomez-Pinto, I., Vengut-Climent, E., Lucas, R., Avino, A., Eritja, R., Gonzalez-Ibanez, C., Morales, J., Muro, A., Penalver, P., Fonseca-Guerra, C., Bickelhaupt, M.

(2016) Angew Chem Int Ed Engl 55: 8643-8647

Released	2016-08-31
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPTPAPGPCP(GL6)PGPTPCPAPTPC)-3') (nucleic acid) DNA (5'-D(GPAPTPGPAPCPTPGPCPTPAPG)-3') (nucleic acid)

Explore in 3D

7NBK	Download File View File

Solution structure of DNA duplex containing a 2'-deoxy-2'2'-difluorodeoxycytidine (gemcitabine) modification

Cabrero, C., Martin-Pintado, N., Mazzini, S., Gargallo, R., Eritja, R., Avino, A., Gonzalez, C.

(2021) Chemistry

Released	2021-04-07
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPGPTPAP(FFC)PG)-3') (nucleic acid)

Explore in 3D

7NBL	Download File View File

Solution structure of DNA:RNA hybrid containing a 2'-deoxy-2'2'-difluorodeoxycytidine (gemcitabine) modification

Cabrero, C., Martin-Pintado, N., Mazzini, S., Gargallo, R., Eritja, R., Avino, A., Gonzalez, C.

(2021) Chemistry

Released	2021-04-07
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPTPAP(FFC)PAPCPGPG)-3') (nucleic acid) RNA (5'-R(CPCPGPUPGPUPAPG)-3') (nucleic acid)

Explore in 3D

7NEJ	Download File View File

Solution structure of DNA:RNA hybrid duplex

Cabrero, C., Martin-Pintado, N., Mazzini, S., Gargallo, R., Eritja, R., Avino, A., Gonzalez, C.

(2021) Chemistry

Released	2021-04-07
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPTPAPCPAPCPGPG)-3') (nucleic acid) RNA (5'-R(CPCPGPUPGPUPAPG)-3') (nucleic acid)

1 to 10 of 10 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification