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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gernstein, M."

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Search Summary

This query matches 26 Structures.

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Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Escherichia coli K-12 (11)
	Homo sapiens (8)
	Methanothermobacter thermautotrophicus (3)
	Escherichia coli (2)
	Escherichia coli CFT073 (1)
	Klebsiella pneumoniae 342 (1)
	Saccharomyces cerevisiae (1)

Taxonomy

	Bacteria (14)
	Eukaryota (9)
	Archaea (3)

Experimental Method

	SOLUTION NMR (17)
	X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (4)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (13)
	2005 - 2009 (3)
	2010 - 2014 (10)

Enzyme Classification Name

	Transferases (10)
	Hydrolases (3)
	Isomerases (1)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (20)
	Cyclic (7)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	Artifacts (12)
	All alpha proteins (8)
	Alpha and beta proteins (a+b) (5)
	All beta proteins (2)
	Small proteins (2)

AllSelected

1 to 25 of 26 Structures

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1D5G	Download File View File

SOLUTION STRUCTURE OF THE PDZ2 DOMAIN FROM HUMAN PHOSPHATASE HPTP1E COMPLEXED WITH A PEPTIDE

Kozlov, G., Gehring, K., Ekiel, I.

(2002) J Mol Biol 320: 813-820

Released	2002-07-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	HUMAN PHOSPHATASE HPTP1E (protein) PEPTIDE FADSEADENEQVSAV (protein)

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1G9L	Download File View File

SOLUTION STRUCTURE OF THE PABC DOMAIN OF HUMAN POLY(A) BINDING PROTEIN

Kozlov, G., Trempe, J.-F., Khaleghpour, K., Kahvejian, A., Ekiel, I., Gehring, K.

(2001) Proc Natl Acad Sci U S A 98: 4409-4413

Released	2001-03-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	POLYADENYLATE-BINDING PROTEIN 1 (protein)

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1GH8	Download File View File

SOLUTION STRUCTURE OF THE ARCHAEAL TRANSLATION ELONGATION FACTOR 1BETA FROM METHANOBACTERIUM THERMOAUTOTROPHICUM

Kozlov, G., Ekiel, I., Gehring, K., Northeast Structural Genomics Consortium (NESG)

(2000) J Biomol NMR 17: 187-194

Released	2000-12-13
Method	SOLUTION NMR
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	TRANSLATION ELONGATION FACTOR 1BETA (protein)

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1GH9	Download File View File

SOLUTION STRUCTURE OF A 8.3 KDA PROTEIN (GENE MTH1184) FROM METHANOBACTERIUM THERMOAUTOTROPHICUM

Kozlov, G., Ekiel, I., Gehring, K., Northeast Structural Genomics Consortium (NESG)

(2000) Nat Struct Biol 7: 903-909

Released	2000-12-11
Method	SOLUTION NMR
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	8.3 KDA PROTEIN (GENE MTH1184) (protein)

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1IFW	Download File View File

SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF POLY(A) BINDING PROTEIN FROM SACCHAROMYCES CEREVISIAE

Kozlov, G., Siddiqui, N., Coillet-Matillon, S., Sprules, T., Ekiel, I., Gehring, K.

(2002) J Biol Chem 277: 22822-22828

Released	2002-07-24
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	POLYADENYLATE-BINDING PROTEIN, CYTOPLASMIC AND NUCLEAR (protein)

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1JCU	Download File View File

Solution Structure of MTH1692 Protein from Methanobacterium thermoautotrophicum

Kozlov, G., Ekiel, I., Gehring, K.

(2002) Proc Natl Acad Sci U S A 99: 1825-1830

Released	2002-07-24
Method	SOLUTION NMR
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	conserved protein MTH1692 (protein)

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1JGN	Download File View File

Solution structure of the C-terminal PABC domain of human poly(A)-binding protein in complex with the peptide from Paip2

Kozlov, G., Siddiqui, N., Coillet-Matillon, S., Ekiel, I., Gehring, K.

(2004) EMBO J 23: 272-281

Released	2003-06-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	polyadenylate-binding protein 1 (protein) polyadenylate-binding protein-interacting protein 2 (protein)

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1JH4	Download File View File

Solution structure of the C-terminal PABC domain of human poly(A)-binding protein in complex with the peptide from Paip1

Kozlov, G., Siddiqui, N., Coillet-Matillon, S., Ekiel, I., Gehring, K.

(2004) EMBO J 23: 272-281

Released	2003-06-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	polyadenylate-binding protein 1 (protein) polyadenylate-binding protein-interacting protein-1 (protein)

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1L1P	Download File View File

Solution Structure of the PPIase Domain from E. coli Trigger Factor

Kozlov, G., Trempe, J.-F., Perreault, A., Wong, M., Denisov, A., Ghandi, S., Gehring, K., Ekiel, I., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

To be published

Released	2003-06-24
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	trigger factor (protein)

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1P9K	Download File View File

THE SOLUTION STRUCTURE OF YBCJ FROM E. COLI REVEALS A RECENTLY DISCOVERED ALFAL MOTIF INVOLVED IN RNA-BINDING

Volpon, L., Lievre, C., Osborne, M.J., Gandhi, S., Iannuzzi, P., Larocque, R., Matte, A., Cygler, M., Gehring, K., Ekiel, I., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2003) J Bacteriol 185: 4204-4210

Released	2003-11-25
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	orf, hypothetical protein (protein)

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1R6H	Download File View File

Solution Structure of human PRL-3

Kozlov, G., Gehring, K., Ekiel, I.

(2004) J Biol Chem 279: 11882-11889

Released	2004-01-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	protein tyrosine phosphatase type IVA, member 3 isoform 1 (protein)

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1SSL	Download File View File

Solution structure of the PSI domain from the Met receptor

Kozlov, G., Perreault, A., Schrag, J.D., Cygler, M., Gehring, K., Ekiel, I.

(2004) Biochem Biophys Res Commun 321: 234-240

Released	2004-10-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor receptor (protein)

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1Y7X	Download File View File

Solution structure of a two-repeat fragment of major vault protein

Kozlov, G., Vavelyuk, O., Minailiuc, O., Banville, D., Gehring, K., Ekiel, I.

(2006) J Mol Biol 356: 444-452

Released	2005-12-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Major vault protein (protein)

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2H7A	Download File View File

NMR Structure of the Conserved Protein YcgL from Escherichia coli representing the DUF709 Family Reveals a Novel a/b/a Sandwich Fold

Minailiuc, O.M., Vavelyuk, O., Ekiel, I., Hung, M.-Ni., Cygler, M., Gandhi, S., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2007) Proteins 66: 1004-1007

Released	2007-04-17
Method	SOLUTION NMR
Organisms	Escherichia coli CFT073
Macromolecule	Hypothetical protein ycgL (protein)

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2KQX	Download File View File

NMR structure of the J-domain (residues 2-72) in the Escherichia coli CbpA

Ekiel, I.

(2010) J Mol Biol 398: 111-121

Released	2010-04-21
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Curved DNA-binding protein (protein)

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2PQ4	Download File View File

NMR solution structure of NapD in complex with NapA1-35 signal peptide

Minailiuc, O.M., Ekiel, I., Milad, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

To be published

Released	2008-05-20
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Periplasmic nitrate reductase precursor (protein) Protein napD (protein)

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3PDZ	Download File View File

SOLUTION STRUCTURE OF THE PDZ2 DOMAIN FROM HUMAN PHOSPHATASE HPTP1E

Kozlov, G., Gehring, K., Ekiel, I.

(2000) Biochemistry 39: 2572-2580

Released	2000-03-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (TYROSINE PHOSPHATASE (PTP-BAS, TYPE 1)) (protein)

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3PNK	Download File View File

Crystal Structure of E.coli Dha kinase DhaK

Shi, R., McDonald, L., Matte, A., Cygler, M., Ekiel, I., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) Proc Natl Acad Sci U S A 108: 1302-1307

Released	2011-01-12
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Escherichia coli K-12
Macromolecule	PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK (protein)
Unique Ligands	GOL

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3PNL	Download File View File

Crystal Structure of E.coli Dha kinase DhaK-DhaL complex

Shi, R., McDonald, L., Matte, A., Cygler, M., Ekiel, I., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) Proc Natl Acad Sci U S A 108: 1302-1307

Released	2011-01-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	PTS-dependent dihydroxyacetone kinase, ADP-binding subunit dhaL (protein) PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK (protein)
Unique Ligands	ADP, GOL, MG

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3PNM	Download File View File

Crystal Structure of E.coli Dha kinase DhaK (H56A)

Shi, R., McDonald, L., Matte, A., Cygler, M., Ekiel, I., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) Proc Natl Acad Sci U S A 108: 1302-1307

Released	2011-01-12
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli K-12
Macromolecule	PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK (protein)

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3PNO	Download File View File

Crystal Structure of E.coli Dha kinase DhaK (H56N)

Shi, R., McDonald, L., Matte, A., Cygler, M., Ekiel, I., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) Proc Natl Acad Sci U S A 108: 1302-1307

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Escherichia coli K-12
Macromolecule	PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK (protein)

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3PNQ	Download File View File

Crystal Structure of E.coli Dha kinase DhaK (H56N) complex with Dha

Shi, R., McDonald, L., Matte, A., Cygler, M., Ekiel, I., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) Proc Natl Acad Sci U S A 108: 1302-1307

Released	2011-01-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK (protein)
Unique Ligands	2HA

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3UCS	Download File View File

Crystal structure of the complex between CBPA J-domain and CBPM

Shi, R., Sarraf, N.S., Cygler, M., Ekiel, I., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

To be published

Released	2013-07-03
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Escherichia coli K-12 Klebsiella pneumoniae 342
Macromolecule	Chaperone-modulator protein CbpM (protein) Curved DNA-binding protein (protein)

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4LRX	Download File View File

Crystal Structure of the E.coli DhaR(N)-DhaK complex

Shi, R., McDonald, L., Cygler, M., Ekiel, I.

(2014) Structure 22: 478-487

Released	2014-01-29
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Escherichia coli K-12
Macromolecule	PTS-dependent dihydroxyacetone kinase operon regulatory protein (protein) PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK (protein)
Unique Ligands	GOL

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4LRY	Download File View File

Crystal Structure of the E.coli DhaR(N)-DhaK(T79L) complex

Shi, R., McDonald, L., Cygler, M., Ekiel, I.

(2014) Structure 22: 478-487

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Escherichia coli K-12
Macromolecule	PTS-dependent dihydroxyacetone kinase operon regulatory protein (protein) PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK (protein)
Unique Ligands	GOL

1 to 25 of 26 Structures

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