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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Ishiguro, K."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Escherichia coli (14)
	Homo sapiens (10)
	Escherichia coli BW25113 (7)
	Pseudomonas putida NBRC 14164 (5)
	Haloarcula marismortui (1)

Taxonomy

	Bacteria (14)
	Eukaryota (10)
	Archaea (1)

Experimental Method

ELECTRON MICROSCOPY (18)

Polymer Entity Type

	Protein (18)
	RNA (18)

Refinement Resolution (Å)

	2.0 - 2.5 (12)
	2.5 - 3.0 (6)

Release Date

2020 - 2024 (18)

Enzyme Classification Name

Lyases (4)

Symmetry Type

Asymmetric (18)

AllSelected

1 to 18 of 18 Structures

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7Y7C	Download File View File

Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.51 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG

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7Y7D	Download File View File

Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.58 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG

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7Y7E	Download File View File

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.41 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MAN, MG

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7Y7F	Download File View File

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.43 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MAN, MG

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7Y7G	Download File View File

Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.34 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	GAL, MG

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7Y7H	Download File View File

Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.51 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	GAL, MG

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8HSP	Download File View File

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Akiyama, N., Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2024) Nat Struct Mol Biol 31: 817-825

Released	2024-04-03
Method	ELECTRON MICROSCOPY 2.32 Å
Organisms	Escherichia coli Escherichia coli BW25113
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	K, MG

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8HTZ	Download File View File

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Akiyama, N., Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2024) Nat Struct Mol Biol 31: 817-825

Released	2024-04-03
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Escherichia coli Escherichia coli BW25113 Haloarcula marismortui
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	K, MG

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8HU1	Download File View File

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state

Akiyama, N., Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2024) Nat Struct Mol Biol 31: 817-825

Released	2024-04-03
Method	ELECTRON MICROSCOPY 2.69 Å
Organisms	Escherichia coli Escherichia coli BW25113
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	K, MG

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8JDJ	Download File View File

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-12-06
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 73 Unique nucleic acid chains: 6
Unique Ligands	MG, ZN

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8JDK	Download File View File

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-12-06
Method	ELECTRON MICROSCOPY 2.26 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 73 Unique nucleic acid chains: 6
Unique Ligands	MAN, MG, ZN

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8JDL	Download File View File

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-12-06
Method	ELECTRON MICROSCOPY 2.42 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 73 Unique nucleic acid chains: 6
Unique Ligands	GAL, MG, ZN

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8JDM	Download File View File

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-12-06
Method	ELECTRON MICROSCOPY 2.67 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 73 Unique nucleic acid chains: 6
Unique Ligands	GAL, MG, ZN

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8YUO	Download File View File

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Akiyama, N., Ishiguro, K., Shirouzu, M., Suzuki, T.

(2024) Nat Chem Biol

Released	2024-11-06
Method	ELECTRON MICROSCOPY 2.25 Å
Organisms	Escherichia coli Pseudomonas putida NBRC 14164
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	MG

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8YUP	Download File View File

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Akiyama, N., Ishiguro, K., Shirouzu, M., Suzuki, T.

(2024) Nat Chem Biol

Released	2024-11-06
Method	ELECTRON MICROSCOPY 2.39 Å
Organisms	Escherichia coli Escherichia coli BW25113 Pseudomonas putida NBRC 14164
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG

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8YUQ	Download File View File

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Akiyama, N., Ishiguro, K., Shirouzu, M., Suzuki, T.

(2024) Nat Chem Biol

Released	2024-11-06
Method	ELECTRON MICROSCOPY 2.41 Å
Organisms	Escherichia coli Escherichia coli BW25113 Pseudomonas putida NBRC 14164
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG

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8YUR	Download File View File

E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA

Akiyama, N., Ishiguro, K., Shirouzu, M., Suzuki, T.

(2024) Nat Chem Biol

Released	2024-11-06
Method	ELECTRON MICROSCOPY 2.47 Å
Organisms	Escherichia coli Escherichia coli BW25113 Pseudomonas putida NBRC 14164
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG

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8YUS	Download File View File

E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA

Akiyama, N., Ishiguro, K., Shirouzu, M., Suzuki, T.

(2024) Nat Chem Biol

Released	2024-11-06
Method	ELECTRON MICROSCOPY 2.43 Å
Organisms	Escherichia coli Escherichia coli BW25113 Pseudomonas putida NBRC 14164
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG

1 to 18 of 18 Structures

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