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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Ito, S."

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Search Summary

This query matches 134 Structures.

Refinements

Structure Determination Methodology

experimental (134)

Scientific Name of Source Organism

	Homo sapiens (23)
	Bos taurus (21)
	synthetic construct (18)
	Bacillus sp. KSM-K38 (6)
	Chlamydomonas reinhardtii (6)
	Mus musculus (6)
	Microbacterium hydrocarbonoxydans (5)
	Streptomyces olivaceoviridis (5)
	Bacteroides fragilis NCTC 9343 (4)
	Cupriavidus necator (4)

More...

Taxonomy

	Eukaryota (60)
	Bacteria (49)
	other sequences (18)
	Archaea (11)

Experimental Method

X-RAY DIFFRACTION (134)

Polymer Entity Type

Protein (134)

Refinement Resolution (Å)

	1.0 - 1.5 (17)
	1.5 - 2.0 (41)
	2.0 - 2.5 (43)
	2.5 - 3.0 (28)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (1)
	2000 - 2004 (21)
	2005 - 2009 (16)
	2010 - 2014 (11)
	2015 - 2019 (15)
	2020 - 2024 (66)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (40)
	Transferases (20)
	Oxidoreductases (11)
	Isomerases (3)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (6)
	mpstruc (6)
	OPM (1)

Symmetry Type

	Asymmetric (72)
	Cyclic (48)
	Dihedral (15)

SCOP Classification

	All beta proteins (48)
	Alpha and beta proteins (a/b) (35)
	All alpha proteins (5)
	Artifacts (6)

AllSelected

1 to 25 of 134 Structures

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1EE6	Download File View File

CRYSTAL STRUCTURE OF PECTATE LYASE FROM BACILLUS SP. STRAIN KSM-P15.

Akita, M., Suzuki, A., Kobayashi, T., Ito, S., Yamane, T.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1786-1792

Released	2001-01-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus sp. KSM-P15
Macromolecule	PECTATE LYASE (protein)
Unique Ligands	CA

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1G01	Download File View File

ALKALINE CELLULASE K CATALYTIC DOMAIN

Shirai, T., Ishida, H., Noda, J., Yamane, T., Ozaki, K., Hakamada, Y., Ito, S.

(2001) J Mol Biol 310: 1079-1087

Released	2001-08-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus sp. KSM-635
Macromolecule	ENDOGLUCANASE (protein)
Unique Ligands	ACY, CD

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1G0C	Download File View File

ALKALINE CELLULASE K CATALYTIC DOMAIN-CELLOBIOSE COMPLEX

Shirai, T., Ishida, H., Noda, J., Yamane, T., Ozaki, K., Hakamada, Y., Ito, S.

(2001) J Mol Biol 310: 1079-1087

Released	2001-08-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus sp. KSM-635
Macromolecule	ENDOGLUCANASE (protein)
Unique Ligands	ACY, CD
Unique branched monosaccharides	BGC

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1GC5	Download File View File

CRYSTAL STRUCTURE OF A NOVEL ADP-DEPENDENT GLUCOKINASE FROM THERMOCOCCUS LITORALIS

Ito, S., Fushinobu, S., Yoshioka, I., Koga, S., Matsuzawa, H., Wakagi, T.

(2001) Structure 9: 205-214

Released	2001-07-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermococcus litoralis
Macromolecule	ADP-DEPENDENT GLUCOKINASE (protein)
Unique Ligands	ADP

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1IQA	Download File View File

CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF MOUSE RANK LIGAND

Ito, S., Wakabayashi, K., Ubukata, O., Hayashi, S., Okada, F., Hata, T.

(2002) J Biol Chem 277: 6631-6636

Released	2002-03-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	RECEPTOR ACTIVATOR OF NUCLEAR FACTOR KAPPA B LIGAND (protein)

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1IQW	Download File View File

CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF THE MOUSE ANTI-HUMAN FAS ANTIBODY HFE7A

Ito, S., Takayama, T., Hanzawa, H., Ichikawa, K., Ohsumi, J., Serizawa, N., Hata, T., Haruyama, H.

(2002) J Biochem 131: 137-143

Released	2002-01-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	ANTIBODY M-HFE7A, HEAVY CHAIN (protein) ANTIBODY M-HFE7A, LIGHT CHAIN (protein)

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1IT9	Download File View File

CRYSTAL STRUCTURE OF AN ANTIGEN-BINDING FRAGMENT FROM A HUMANIZED VERSION OF THE ANTI-HUMAN FAS ANTIBODY HFE7A

Ito, S., Takayama, T., Hanzawa, H., Takahashi, T., Miyadai, K., Serizawa, N., Hata, T., Haruyama, H.

(2002) Biol Pharm Bull 25: 1537-1545

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	HUMANIZED ANTIBODY HFE7A, HEAVY CHAIN (protein) HUMANIZED ANTIBODY HFE7A, LIGHT CHAIN (protein)

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1J3P	Download File View File

Crystal structure of Thermococcus litoralis phosphoglucose isomerase

Jeong, J.-J., Fushinobu, S., Ito, S., Hidaka, M., Shoun, H., Wakagi, T.

To be published

Released	2004-02-24
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Thermococcus litoralis
Macromolecule	Phosphoglucose Isomerase (protein)
Unique Ligands	FE

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1J3Q	Download File View File

Crystal structure of Thermococcus litoralis phosphogrucose isomerase soaked with FeSO4

Jeong, J.-J., Fushinobu, S., Ito, S., Hidaka, M., Shoun, H., Wakagi, T.

To be published

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermococcus litoralis
Macromolecule	Phosphoglucose Isomerase (protein)
Unique Ligands	FE

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1J3R	Download File View File

Crystal structure of Thermococcus litoralis phosphogrucose isomerase complexed with gluconate-6-phosphate

Jeong, J.-J., Fushinobu, S., Ito, S., Hidaka, M., Shoun, H., Wakagi, T.

To be published

Released	2004-02-24
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Thermococcus litoralis
Macromolecule	Phosphoglucose Isomerase (protein)
Unique Ligands	6PG, FE

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1MPT	Download File View File

CRYSTAL STRUCTURE OF A NEW ALKALINE SERINE PROTEASE (M-PROTEASE) FROM BACILLUS SP. KSM-K16

Yamane, T., Kani, T., Hatanaka, T., Suzuki, A., Ashida, T., Kobayashi, T., Ito, S., Yamashita, O.

(1995) Acta Crystallogr D Biol Crystallogr 51: 199-206

Released	1994-06-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Shouchella clausii KSM-K16
Macromolecule	M-PROTEASE (protein)
Unique Ligands	CA

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1UA4	Download File View File

Crystal Structure of an ADP-dependent Glucokinase from Pyrococcus furiosus

Ito, S., Jeong, J.J., Yoshioka, I., Koga, S., Fushinobu, S., Shoun, H., Wakagi, T.

(2003) J Mol Biol 331: 871-883

Released	2004-02-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrococcus furiosus
Macromolecule	ADP-dependent glucokinase (protein)
Unique Ligands	AMP, BGC, GLC

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1UD2	Download File View File

Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38)

Nonaka, T., Fujihashi, M., Kita, A., Hagihara, H., Ozaki, K., Ito, S., Miki, K.

(2003) J Biol Chem 278: 24818-24824

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Bacillus sp. KSM-K38
Macromolecule	amylase (protein)
Unique Ligands	GOL, NA

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1UD3	Download File View File

Crystal structure of AmyK38 N289H mutant

Nonaka, T., Fujihashi, M., Kita, A., Hagihara, H., Ozaki, K., Ito, S., Miki, K.

(2003) J Biol Chem 278: 24818-24824

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bacillus sp. KSM-K38
Macromolecule	amylase (protein)
Unique Ligands	NA

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1UD4	Download File View File

Crystal structure of calcium free alpha amylase from Bacillus sp. strain KSM-K38 (AmyK38, in calcium containing solution)

Nonaka, T., Fujihashi, M., Kita, A., Hagihara, H., Ozaki, K., Ito, S., Miki, K.

(2003) J Biol Chem 278: 24818-24824

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bacillus sp. KSM-K38
Macromolecule	amylase (protein)
Unique Ligands	NA

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1UD5	Download File View File

Crystal structure of AmyK38 with rubidium ion

Nonaka, T., Fujihashi, M., Kita, A., Hagihara, H., Ozaki, K., Ito, S., Miki, K.

(2003) J Biol Chem 278: 24818-24824

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bacillus sp. KSM-K38
Macromolecule	amylase (protein)
Unique Ligands	NA, RB

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1UD6	Download File View File

Crystal structure of AmyK38 with potassium ion

Nonaka, T., Fujihashi, M., Kita, A., Hagihara, H., Ozaki, K., Ito, S., Miki, K.

(2003) J Biol Chem 278: 24818-24824

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus sp. KSM-K38
Macromolecule	amylase (protein)
Unique Ligands	K

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1UD8	Download File View File

Crystal structure of AmyK38 with lithium ion

Nonaka, T., Fujihashi, M., Kita, A., Hagihara, H., Ozaki, K., Ito, S., Miki, K.

(2003) J Biol Chem 278: 24818-24824

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	Bacillus sp. KSM-K38
Macromolecule	amylase (protein)
Unique Ligands	NA

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1WKY	Download File View File

Crystal structure of alkaline mannanase from Bacillus sp. strain JAMB-602: catalytic domain and its Carbohydrate Binding Module

Akita, M., Takeda, N., Hirasawa, K., Sakai, H., Kawamoto, M., Yamamoto, M., Grant, W.D., Hatada, Y., Ito, S., Horikoshi, K.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1490-1492

Released	2005-06-15
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Bacillus sp. JAMB-602
Macromolecule	endo-beta-1,4-Mannanase (protein)
Unique Ligands	CA, CL, NA

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1WMD	Download File View File

Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.30 angstrom, 100 K)

Nonaka, T., Fujihashi, M., Kita, A., Saeki, K., Ito, S., Horikoshi, K., Miki, K.

(2004) J Biol Chem 279: 47344-47351

Released	2004-09-14
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Bacillus sp. KSM-KP43
Macromolecule	protease (protein)
Unique Ligands	CA, DIO, GOL, SO4

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1WME	Download File View File

Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.50 angstrom, 293 K)

Nonaka, T., Fujihashi, M., Kita, A., Saeki, K., Ito, S., Horikoshi, K., Miki, K.

(2004) J Biol Chem 279: 47344-47351

Released	2004-09-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacillus sp. KSM-KP43
Macromolecule	protease (protein)
Unique Ligands	CA

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1WMF	Download File View File

Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (oxidized form, 1.73 angstrom)

Nonaka, T., Fujihashi, M., Kita, A., Saeki, K., Ito, S., Horikoshi, K., Miki, K.

(2004) J Biol Chem 279: 47344-47351

Released	2004-09-14
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Bacillus sp. KSM-KP43
Macromolecule	protease (protein)
Unique Ligands	CA, DIO, GOL

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1WSD	Download File View File

Alkaline M-protease form I crystal structure

Shirai, T., Suzuki, A., Yamane, T., Ashida, T., Kobayashi, T., Hitomi, J., Ito, S.

(1997) Protein Eng 10: 627-634

Released	2004-11-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Shouchella clausii KSM-K16
Macromolecule	M-protease (protein)
Unique Ligands	CA, SO4

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1Y0L	Download File View File

Catalytic elimination antibody 34E4 in complex with hapten

Debler, E.W., Ito, S., Heine, A., Wilson, I.A.

(2005) Proc Natl Acad Sci U S A 102: 4984-4989

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Catalytic Antibody Fab 34E4 Heavy chain (protein) Catalytic Antibody Fab 34E4 Light chain (protein)
Unique Ligands	CL, HAN

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1Y18	Download File View File

Fab fragment of catalytic elimination antibody 34E4 E(H50)D mutant in complex with hapten

Debler, E.W., Ito, S., Heine, A., Wilson, I.A.

(2005) Proc Natl Acad Sci U S A 102: 4984-4989

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Catalytic antibody 34E4 heavy chain (protein) Catalytic antibody 34E4 light chain (protein)
Unique Ligands	CL, HAN