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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Structure Author = "Ovaa, H."

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This query matches 35 Structures.

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1XD3	Download File View File

Crystal structure of UCHL3-UbVME complex

Misaghi, S., Galardy, P.J., Meester, W.J.N., Ovaa, H., Ploegh, H.L., Gaudet, R.

(2005) J Biol Chem 280: 1512-1520

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	UBC protein (protein) Ubiquitin Carboxyl-terminal esterase L3 (protein)
Unique Ligands	GVE, MG

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2X4N	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to residual fragments of a photocleavable peptide that is cleaved upon UV-light treatment

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12298

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein) HLA-A2.1-RESTRICTED INFLUENZA A MATRIX EPITOPE (protein)
Unique Ligands	GOL, MES

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2X4O	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to HIV-1 envelope peptide env120-128

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12298

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	BETA-2-MICROGLOBULIN (protein) ENVELOPE GLYCOPROTEIN GP160 (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein)
Unique Ligands	GOL, MES

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2X4P	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to a photocleavable peptide

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12305

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2.1 (protein) HLA-A2.1-RESTRICTED INFLUENZA A MATRIX EPITOPE (protein)
Unique Ligands	GOL, MES

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2X4Q	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to a photocleavable peptide

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12305

Released	2010-03-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2.1 (protein) HLA-A2.1-RESTRICTED INFLUENZA A MATRIX EPITOPE (protein)
Unique Ligands	GOL, MES

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2X4R	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to Cytomegalovirus (CMV) pp65 epitope

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12298

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human betaherpesvirus 5
Macromolecule	65 KDA PHOSPHOPROTEIN (protein) BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2.1 (protein)
Unique Ligands	GOL

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2X4S	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to a peptide representing the epitope of the H5N1 (Avian Flu) Nucleoprotein

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12298

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) H5N1 INFLUENZA A NUCLEOPROTEIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2.1 (protein)
Unique Ligands	GOL, MES

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2X4T	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to a Peiodate- cleavable peptide

Rodenko, B., Toebes, M., Celie, P.H.N., Perrakis, A., Schumacher, T.N.M., Ovaa, H.

(2009) J Am Chem Soc 131: 12305

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human betaherpesvirus 5
Macromolecule	65 KDA PHOSPHOPROTEIN (protein) BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2.1 (protein)
Unique Ligands	GOL, MES

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2X4U	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to HIV-1 Peptide RT468-476

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12298

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein) REVERSE TRANSCRIPTASE/RIBONUCLEASE H (protein)
Unique Ligands	GOL, MES

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2X70	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to a photocleavable peptide

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12298

Released	2010-12-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2.1 (protein) HLA-A2.1-RESTRICTED INFLUENZA A MATRIX EPITOPE (protein)
Unique Ligands	GOL, MES

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3ZNH	Download File View File

Crimean Congo Hemorrhagic Fever Virus OTU domain in complex with ubiquitin-propargyl.

Ekkebus, R., vanKasteren, S.I., Kulathu, Y., Scholten, A., Berlin, I., deJong, A., Goerdayal, G., Neefjes, J., Heck, A.J.R., Komander, D., Ovaa, H.

(2013) J Am Chem Soc 135: 2867

Released	2013-02-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Crimean-Congo hemorrhagic fever virus strain IbAr10200 Homo sapiens
Macromolecule	POLYUBIQUITIN-B (protein) UBIQUITIN THIOESTERASE (protein)

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4BOP	Download File View File

Structure of OTUD1 OTU domain

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	OTU DOMAIN-CONTAINING PROTEIN 1 (protein)
Unique Ligands	PO4

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4BOQ	Download File View File

Structure of OTUD2 OTU domain

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN THIOESTERASE OTU1 (protein)
Unique Ligands	GOL

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4BOS	Download File View File

Structure of OTUD2 OTU domain in complex with Ubiquitin K11-linked peptide

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	OTUD2 (protein) POLYUBIQUITIN-C (protein) UBIQUITIN THIOESTERASE OTU1 (protein)
Unique Ligands	MG, NO3

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4BOU	Download File View File

Structure of OTUD3 OTU domain

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	OTU DOMAIN-CONTAINING PROTEIN 3 (protein)

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4BOZ	Download File View File

Structure of OTUD2 OTU domain in complex with K11-linked di ubiquitin

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN THIOESTERASE OTU1 (protein) UBIQUITIN-C (protein)
Unique Ligands	GOL

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4UEL	Download File View File

UCH-L5 in complex with ubiquitin-propargyl bound to the RPN13 DEUBAD domain

Sahtoe, D.D., Van Dijk, W.J., El Oualid, F., Ekkebus, R., Ovaa, H., Sixma, T.K.

(2015) Mol Cell 57: 887

Released	2015-03-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	POLYUBIQUITIN-B (protein) PROTEASOMAL UBIQUITIN RECEPTOR ADRM1 (protein) UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 (protein)

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4UEM	Download File View File

UCH-L5 in complex with the RPN13 DEUBAD domain

Sahtoe, D.D., Van Dijk, W.J., El Oualid, F., Ekkebus, R., Ovaa, H., Sixma, T.K.

(2015) Mol Cell 57: 887

Released	2015-03-04
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Homo sapiens
Macromolecule	PROTEASOMAL UBIQUITIN RECEPTOR ADRM1 (protein) UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 (protein)

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4UF5	Download File View File

Crystal structure of UCH-L5 in complex with inhibitory fragment of INO80G

Sahtoe, D.D., Van Dijk, W.J., El Oualid, F., Ekkebus, R., Ovaa, H., Sixma, T.K.

(2015) Mol Cell 57: 887

Released	2015-03-04
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Homo sapiens
Macromolecule	NUCLEAR FACTOR RELATED TO KAPPA-B-BINDING PROTEIN (protein) UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 (protein)

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4UF6	Download File View File

UCH-L5 in complex with ubiquitin-propargyl bound to an activating fragment of INO80G

Sahtoe, D.D., Van Dijk, W.J., El Oualid, F., Ekkebus, R., Ovaa, H., Sixma, T.K.

(2015) Mol Cell 57: 887

Released	2015-03-04
Method	X-RAY DIFFRACTION 3.69 Å
Organisms	Homo sapiens
Macromolecule	NUCLEAR FACTOR RELATED TO KAPPA-B-BINDING PROTEIN (protein) POLYUBIQUITIN-B (protein) UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 (protein)

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4WJ5	Download File View File

Structure of HLA-A2 in complex with an altered peptide ligands based on Mart-1 variant epitope

Celie, P.H.N., Rodenko, B., Ovaa, H.

(2014) J Immunol 193: 4803-4813

Released	2014-10-29
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) Melanoma antigen recognized by T-cells 1 (protein)
Unique Ligands	GOL

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5IFR	Download File View File

Structure of the stable UBE2D3-UbDha conjugate

Pruneda, J.N., Mulder, M.P.C., Witting, K., Ovaa, H., Komander, D.

(2016) Nat Chem Biol 12: 523-530

Released	2016-05-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Polyubiquitin-B (protein) Ubiquitin-conjugating enzyme E2 D3 (protein)
Unique Ligands	GOL

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5LRU	Download File View File

Structure of Cezanne/OTUD7B OTU domain

Mevissen, T.E.T., Kulathu, Y., Mulder, M.P.C., Geurink, P.P., Maslen, S.L., Gersch, M., Elliott, P.R., Burke, J.E., van Tol, B.D.M., Akutsu, M., El Oualid, F., Kawasaki, M., Freund, S.M.V., Ovaa, H., Komander, D.

(2016) Nature 538: 402-405

Released	2016-10-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	OTU domain-containing protein 7B (protein)

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5LRV	Download File View File

Structure of Cezanne/OTUD7B OTU domain bound to Lys11-linked diubiquitin

(2016) Nature 538: 402-405

Released	2016-10-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	OTU domain-containing protein 7B (protein) Polyubiquitin-B (protein)
Unique Ligands	GOL, PO4

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5LRW	Download File View File

Structure of Cezanne/OTUD7B OTU domain bound to ubiquitin

(2016) Nature 538: 402-405

Released	2016-10-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	OTU domain-containing protein 7B (protein) Polyubiquitin-B (protein)
Unique Ligands	GOL