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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Tripathi, P."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (8)
	Escherichia coli (4)
	Plasmodium falciparum (3)
	Plasmodium falciparum 3D7 (3)
	synthetic construct (3)
	Mycobacterium tuberculosis H37Rv (1)

Taxonomy

	Eukaryota (8)
	Bacteria (5)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (11)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (13)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (4)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (12)

Symmetry Type

Asymmetric (13)

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1 to 13 of 13 Structures

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6ANR	Download File View File

Crystal structure of a self resistance protein ClbS from colibactin biosynthetic gene cluster

Tripathi, P., Bruner, S.D.

(2017) J Am Chem Soc 139: 17719-17722

Released	2018-06-27
Method	X-RAY DIFFRACTION 2.098 Å
Organisms	Escherichia coli
Macromolecule	Colibactin self-protection protein ClbS (protein)

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7MTL	Download File View File

Crystal structure of colibactin self-resistance protein ClbS in complex with a dsDNA

Tripathi, P., Bruner, S.D.

(2021) Biochemistry 60: 1619-1625

Released	2021-05-26
Method	X-RAY DIFFRACTION 2.446 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	Colibactin self-protection protein ClbS (protein) DNA (5'-D(APAPTPTPCPCPCPAPCPTPTPCPCPAPG)-3') (nucleic acid) DNA (5'-D(CPTPGPGPAPAPGPTPGPGPGPAPAPTPT)-3') (nucleic acid)

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7MTT	Download File View File

Crystal structure of colibactin self-resistance protein ClbS in complex with two molecules of CHES

Tripathi, P., Bruner, S.D.

(2021) Biochemistry 60: 1619-1625

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli
Macromolecule	Colibactin self-protection protein ClbS (protein)
Unique Ligands	NHE

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7RAJ	Download File View File

Structure of PfCSP peptide 21 with antibody iGL-CIS43.D3

Tripathi, P., Kwong, P.D.

(2021) Immunity 54: 2859-2876.e7

Released	2021-12-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Plasmodium falciparum
Macromolecule	ASN-PRO-ASP-PRO-ASN-ALA-ASN-PRO-ASN-VAL-ASP-PRO-ASN-ALA-ASN (protein) iGL-CIS43.D3 Fab Heavy chain (protein) iGL-CIS43.D3 Fab light chain (protein)
Unique Ligands	MES, ZN

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7SG5	Download File View File

Structure of PfCSP peptide 21 with antibody CIS43_Var2

Tripathi, P., Kwong, P.D.

(2022) J Exp Med 219:

Released	2022-06-22
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CIS43_Var2 Fab Heavy chain (protein) CIS43_Var2 Fab Light chain (protein) PfCSP peptide 21 (protein)
Unique Ligands	GOL, SO4

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7SG6	Download File View File

Structure of PfCSP peptide 21 with antibody CIS43_Var10

Tripathi, P., Kwong, P.D.

(2022) J Exp Med 219:

Released	2022-06-22
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CIS43_Var10 Fab Heavy chain (protein) CIS43_Var10 Fab Light chain (protein) PfCSP peptide 21 (protein)
Unique Ligands	GOL

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7UFN	Download File View File

Structure of PfCSP peptide 21 with antibody P3-21

Tripathi, P., Kwong, P.D.

To be published

Released	2023-04-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Plasmodium falciparum
Macromolecule	P3-21 Fab Heavy chain (protein) P3-21 Fab Light chain (protein) PfCSP peptide 21 (protein)
Unique Ligands	SO4

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7UFO	Download File View File

Structure of PfCSP peptide 21 with antibody P3-42

Tripathi, P., Kwong, P.D.

To be published

Released	2023-04-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Plasmodium falciparum
Macromolecule	P3-42 Fab Heavy chain (protein) P3-42 Fab Light chain (protein) PfCSP peptide 21 (protein)
Unique Ligands	GOL, SO4

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7UFQ	Download File View File

Structure of PfCSP peptide 21 with antibody P3-43

Tripathi, P., Kwong, P.D.

To be published

Released	2023-04-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Plasmodium falciparum 3D7
Macromolecule	P3-43 Fab Heavy chain (protein) P3-43 Fab Light chain (protein) PfCSP peptide 21 (protein)
Unique Ligands	GOL

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8EK1	Download File View File

Cryo-EM structure of a potent anti-malarial antibody L9 in complex with Plasmodium falciparum circumsporozoite protein (PfCSP)(dominant class)

Tripathi, P., Kwong, P.D.

(2023) Structure 31: 480-491.e4

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Plasmodium falciparum 3D7
Macromolecule	Circumsporozoite protein (protein) L9 Fab heavy chain (protein) L9 Fab light chain (protein)

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8EKA	Download File View File

Cryo-EM structure of a potent anti-malarial antibody L9 in complex with Plasmodium falciparum circumsporozoite protein (PfCSP)(class 2)

Tripathi, P., Kwong, P.D.

(2023) Structure 31: 480-491.e4

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Homo sapiens Plasmodium falciparum 3D7
Macromolecule	Circumsporozoite protein (protein) L9 Fab heavy chain (protein) L9 Fab light chain (protein)

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8ES6	Download File View File

Crystal structure of an unusual amidase ClbL from colibactin gene cluster

Tripathi, P., Bruner, S.D.

(2023) Acta Crystallogr D Struct Biol 79: 830-836

Released	2023-09-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Colibactin biosynthesis amidase ClbL (protein)

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8YEQ	Download File View File

Crystal structure of L7/L12 Ribosomal Protein from Mycobacterium tuberculosis

Panicker, L., Tripathi, P.

To be published

Released	2024-09-04
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Large ribosomal subunit protein bL12 (protein)
Unique Ligands	EDO

1 to 13 of 13 Structures

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