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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Uesugi, S."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Homo sapiens (5)
	Mus musculus (3)
	Arabidopsis thaliana (2)
	synthetic construct (1)

Taxonomy

	Eukaryota (10)
	other sequences (1)

Experimental Method

	SOLUTION NMR (14)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

	Protein (10)
	DNA (4)
	RNA (3)

Refinement Resolution (Å)

1.5 - 2.0 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (10)
	2005 - 2009 (4)

Symmetry Type

Asymmetric (10)

SCOP Classification

Alpha and beta proteins (a+b) (8)

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1 to 15 of 15 Structures

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1HD0	Download File View File

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (HNRNP D0 RBD1), NMR

Nagata, T., Kurihara, Y., Matsuda, G., Saeki, J., Kohno, T., Yanagida, Y., Ishikawa, F., Uesugi, S., Katahira, M.

(1999) J Mol Biol 287: 221-237

Released	2000-05-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0) (protein)

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1HD1	Download File View File

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (HNRNP D0 RBD1), NMR

Nagata, T., Kurihara, Y., Matsuda, G., Saeki, J., Kohno, T., Yanagida, Y., Ishikawa, F., Uesugi, S., Katahira, M.

(1999) J Mol Biol 287: 221-237

Released	2000-05-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0) (protein)

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1IQT	Download File View File

Solution structure of the C-terminal RNA-binding domain of heterogeneous nuclear ribonucleoprotein D0 (AUF1)

Katahira, M., Miyanoiri, Y., Enokizono, Y., Matsuda, G., Nagata, T., Ishikawa, F., Uesugi, S.

(2001) J Mol Biol 311: 973-988

Released	2002-08-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	heterogeneous nuclear ribonucleoprotein D0 (protein)

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1MY9	Download File View File

Solution structure of a K+ cation stabilized dimeric RNA quadruplex containing two G:G(:A):G:G(:A) hexads, G:G:G:G tetrads and UUUU loops

Liu, H., Matsugami, A., Katahira, M., Uesugi, S.

(2002) J Mol Biol 322: 955-970

Released	2003-10-07
Method	SOLUTION NMR
Macromolecule	5'-R(GPGPAPGPGPUPUPUPUPGPGPAPGPG)-3' (nucleic acid)

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1MYQ	Download File View File

An intramolecular quadruplex of (GGA)(4) triplet repeat DNA with a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad, and its dimeric interaction

Matsugami, A., Ouhashi, K., Kanagawa, M., Liu, H., Kanagawa, S., Uesugi, S., Katahira, M.

(2001) J Mol Biol 313: 255-269

Released	2002-10-23
Method	SOLUTION NMR
Macromolecule	5'-D(GPGPAPGPGPAPGPGPAPGPGPA)-3' (nucleic acid)

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1NBK	Download File View File

The structure of RNA aptamer for HIV Tat complexed with two argininamide molecules

Matsugami, A., Kobayashi, S., Ouhashi, K., Uesugi, S., Yamamoto, R., Taira, K., Nishikawa, S., Kumar, P.K.R., Katahira, M.

(2003) Structure 11: 533-545

Released	2003-12-03
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA aptamer (nucleic acid)
Unique Ligands	GND

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1OZ8	Download File View File

Intramolecular higher-order packing of parallel quadruplexes comprising a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad of GGA triplet repeat DNA

Matsugami, A., Okuizumi, T., Uesugi, S., Katahira, M.

(2003) J Biol Chem 278: 28147-28153

Released	2004-04-08
Method	SOLUTION NMR
Macromolecule	5'-D(GPGPAPGPGPAPGPGPAPGPGPAPGPGPAPGPGPAPGPGPAPGPGPA)-3' (nucleic acid)

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1UAW	Download File View File

Solution structure of the N-terminal RNA-binding domain of mouse Musashi1

Miyanoiri, Y., Kobayashi, H., Watanabe, M., Ikeda, T., Nagata, T., Okano, H., Uesugi, S., Katahira, M.

(2003) J Biol Chem 278: 41309-41315

Released	2004-03-24
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	mouse-musashi-1 (protein)

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1WTB	Download File View File

Complex structure of the C-terminal RNA-binding domain of hnRNP D (AUF1) with telomere DNA

Enokizono, Y., Konishi, Y., Nagata, K., Ouhashi, K., Uesugi, S., Ishikawa, F., Katahira, M.

(2005) J Biol Chem 280: 18862-18870

Released	2005-04-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Heterogeneous nuclear ribonucleoprotein D0 (protein) 5'-D(PTPAPGPG)-3' (nucleic acid)

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1X0F	Download File View File

Complex structure of the C-terminal RNA-binding domain of hnRNP D(AUF1) with telomeric DNA

Enokizono, Y., Konishi, Y., Nagata, K., Ouhashi, K., Uesugi, S., Ishikawa, F., Katahira, M.

(2005) J Biol Chem 280: 18862-18870

Released	2005-04-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Heterogeneous nuclear ribonucleoprotein D0 (protein) 5'-D(PTPAPGPG)-3' (nucleic acid)

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2EBI	Download File View File

Arabidopsis GT-1 DNA-binding domain with T133D phosphomimetic mutation

Nagata, T., Noto, K., Niyada, E., Ikeda, Y., Yamamoto, Y., Uesugi, S., Murata, J., Hiratsuka, K., Katahira, M.

(2010) Proteins 78: 3033-3047

Released	2008-02-19
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	DNA binding protein GT-1 (protein)

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2JMW	Download File View File

Structure of DNA-Binding Domain of Arabidopsis GT-1

Nagata, T., Niyada, E., Noto, K., Ikeda, Y., Yamamoto, Y., Uesugi, S., Murata, J., Hiratsuka, K., Katahira, M.

(2010) Proteins 78: 3033-3047

Released	2007-12-11
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	DNA binding protein GT-1 (protein)

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2MSS	Download File View File

MUSASHI1 RBD2, NMR

Nagata, T., Kanno, R., Kurihara, Y., Uesugi, S., Imai, T., Sakakibara, S., Okano, H., Katahira, M.

(1999) J Mol Biol 287: 315-330

Released	2000-05-19
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	PROTEIN (MUSASHI1) (protein)

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2MST	Download File View File

MUSASHI1 RBD2, NMR

Nagata, T., Kanno, R., Kurihara, Y., Uesugi, S., Imai, T., Sakakibara, S., Okano, H., Katahira, M.

(1999) J Mol Biol 287: 315-330

Released	2000-05-19
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	PROTEIN (MUSASHI1) (protein)

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413D	Download File View File

A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC)

Tanaka, Y., Fujii, S., Hiroaki, H., Sakata, T., Tanaka, T., Uesugi, S., Tomita, K.-I., Kyogoku, Y.

(1999) Nucleic Acids Res 27: 949-955

Released	1998-07-10
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	RNA (5'-R(UPGPAPGPCPUPUPCPGPGPCPUP*C)-3') (nucleic acid)

1 to 15 of 15 Structures

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