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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Eckenhoff, R."

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Search Summary

This query matches 77 Structures.

Refinements

Structure Determination Methodology

experimental (77)

Scientific Name of Source Organism

	Arabidopsis thaliana (21)
	Homo sapiens (11)
	Saccharomyces cerevisiae S288C (6)
	unidentified (6)
	synthetic construct (5)
	Escherichia coli K-12 (4)
	Zea mays (4)
	Nicotiana tabacum (3)
	Oryza sativa Japonica Group (3)
	Tetrahymena thermophila (3)

More...

Taxonomy

	Eukaryota (61)
	Bacteria (10)
	unclassified sequences (6)
	other sequences (5)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (55)
	ELECTRON MICROSCOPY (21)
	SOLUTION NMR (1)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (74)
	RNA (9)
	DNA (6)
	NA-hybrid (2)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (19)
	2.0 - 2.5 (17)
	2.5 - 3.0 (20)
	3.0 - 3.5 (11)
	3.5 - 4.0 (5)
	4.0 - 4.5 (2)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (14)
	2015 - 2019 (22)
	2020 - 2024 (38)

Enzyme Classification Name

	Hydrolases (13)
	Transferases (9)
	Isomerases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (11)
	MemProtMD (8)
	mpstruc (6)
	OPM (4)

Symmetry Type

	Asymmetric (45)
	Cyclic (30)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	All alpha proteins (2)
	Alpha and beta proteins (a/b) (1)
	Small proteins (2)

AllSelected

1 to 25 of 77 Structures

Page 1 of 4

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3KDH	Download File View File

Structure of ligand-free PYL2

Yin, P., Fan, H., Hao, Q., Yuan, X., Yan, N.

(2009) Nat Struct Mol Biol 16: 1230-1236

Released	2009-11-10
Method	X-RAY DIFFRACTION 1.653 Å
Organisms	Arabidopsis thaliana
Macromolecule	Putative uncharacterized protein At2g26040 (protein)

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3KDI	Download File View File

Structure of (+)-ABA bound PYL2

Yin, P., Fan, H., Hao, Q., Yuan, X., Yan, N.

(2009) Nat Struct Mol Biol 16: 1230-1236

Released	2009-11-10
Method	X-RAY DIFFRACTION 2.379 Å
Organisms	Arabidopsis thaliana
Macromolecule	Putative uncharacterized protein At2g26040 (protein)
Unique Ligands	A8S

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3KDJ	Download File View File

Complex structure of (+)-ABA-bound PYL1 and ABI1

Yin, P., Fan, H., Hao, Q., Yuan, X., Yan, N.

(2009) Nat Struct Mol Biol 16: 1230-1236

Released	2009-11-10
Method	X-RAY DIFFRACTION 1.878 Å
Organisms	Arabidopsis thaliana
Macromolecule	Protein phosphatase 2C 56 (protein) Putative uncharacterized protein At5g46790 (protein)
Unique Ligands	A8S, MN

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3NS2	Download File View File

High-resolution structure of pyrabactin-bound PYL2

Hao, Q., Yin, P., Yan, C., Yuan, X., Wang, J., Yan, N.

(2010) J Biol Chem 285: 28953-28958

Released	2010-07-21
Method	X-RAY DIFFRACTION 1.634 Å
Organisms	Arabidopsis thaliana
Macromolecule	Abscisic acid receptor PYL2 (protein)
Unique Ligands	PYV

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3RT0	Download File View File

Crystal structure of PYL10-HAB1 complex in the absence of abscisic acid (ABA)

Hao, Q., Yin, P., Li, W., Wang, L., Yan, C., Wang, J., Yan, N.

(2011) Mol Cell 42: 662-672

Released	2011-06-22
Method	X-RAY DIFFRACTION 2.113 Å
Organisms	Arabidopsis thaliana
Macromolecule	Abscisic acid receptor PYL10 (protein) Protein phosphatase 2C 16 (protein)
Unique Ligands	MG

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3RT2	Download File View File

Crystal structure of apo-PYL10

Hao, Q., Yin, P., Li, W., Wang, L., Yan, C., Wang, J., Yan, N.

(2011) Mol Cell 42: 662-672

Released	2011-06-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	Abscisic acid receptor PYL10 (protein)

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3U1L	Download File View File

Structure of the mRNA splicing complex component Cwc2

Lu, P., Lu, G., Yan, C., Wang, L., Li, W., Yin, P.

(2012) Biochem J 441: 591-597

Released	2011-11-16
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Pre-mRNA-splicing factor CWC2 (protein)
Unique Ligands	ZN

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3U1M	Download File View File

Structure of the mRNA splicing complex component Cwc2

Lu, P., Lu, G., Yan, C., Wang, L., Li, W., Yin, P.

(2012) Biochem J 441: 591-597

Released	2011-11-16
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Pre-mRNA-splicing factor CWC2 (protein)
Unique Ligands	ZN

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4DJI	Download File View File

Structure of glutamate-GABA antiporter GadC

Ma, D., Lu, P.L., Yan, C.Y., Fan, C., Yin, P., Wang, J.W., Shi, Y.G.

(2012) Nature 483: 632-636

Released	2012-03-14
Method	X-RAY DIFFRACTION 3.187 Å
Organisms	Escherichia coli K-12
Macromolecule	Probable glutamate/gamma-aminobutyrate antiporter (protein)

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4DJK	Download File View File

Structure of glutamate-GABA antiporter GadC

Ma, D., Lu, P.L., Yan, C.Y., Fan, C., Yin, P., Wang, J.W., Shi, Y.G.

(2012) Nature 483: 632-636

Released	2012-03-14
Method	X-RAY DIFFRACTION 3.097 Å
Organisms	Escherichia coli K-12
Macromolecule	Probable glutamate/gamma-aminobutyrate antiporter (protein)

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4GG4	Download File View File

Crystal structure of the TAL effector dHax3 bound to specific DNA-RNA hybrid

Yin, P., Deng, D., Yan, C.Y., Pan, X.J., Yan, N., Shi, Y.G.

(2012) Cell Rep 2: 707-713

Released	2012-10-03
Method	X-RAY DIFFRACTION 2.501 Å
Organisms	Xanthomonas campestris pv. armoraciae
Macromolecule	Hax3 (protein) DNA (5'-D(TPGPTPCPCPCPTPTPTPAPTPCPTPCPTPCPT)-3') (nucleic acid) RNA (5'-R(APGPAPGPAPGPAPUPAPAPAPGPGPGPAPCPA)-3') (nucleic acid)

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4GJP	Download File View File

Crystal structure of the TAL effector dHax3 bound to dsDNA containing repetitive methyl-CpG

Yan, N., Deng, D., Yan, C.Y., Yin, P., Pan, X.J., Shi, Y.G.

To be published

Released	2012-10-03
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Xanthomonas campestris pv. armoraciae
Macromolecule	Hax3 (protein) DNA (5'-D(APGPAPGPAPCPGPCPGPAPAPGPGPGPAPCPA)-3') (nucleic acid) DNA (5'-D(TPGPTPCPCPCPTPTP(5CM)PGP(5CM)PGPTPCPTPCPT)-3') (nucleic acid)
Unique Ligands	MG

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4GJR	Download File View File

Crystal structure of the TAL effector dHax3 bound to methylated dsDNA

Yan, N., Deng, D., Yan, C.Y., Yin, P., Pan, X.J., Shi, Y.G.

To be published

Released	2012-10-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Xanthomonas campestris pv. armoraciae
Macromolecule	Hax3 (protein) DNA (5'-D(APGPGPGPAPGPGPTPAPGPAPGPGPGPAPCPA)-3') (nucleic acid) DNA (5'-D(TPGPTPCPCPCPTP(5CM)PTPAP(5CM)PCPTPCP(5CM)PCPT)-3') (nucleic acid)

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4M57	Download File View File

Crystal structure of the pentatricopeptide repeat protein PPR10 from maize

Yin, P., Li, Q., Yan, C., Liu, Y., Yan, N.

(2013) Nature 504: 168-171

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Zea mays
Macromolecule	Chloroplast pentatricopeptide repeat protein 10 (protein)

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4M59	Download File View File

Crystal structure of the pentatricopeptide repeat protein PPR10 in complex with an 18-nt psaJ RNA element

Yin, P., Li, Q., Yan, C., Liu, Y., Yan, N.

(2013) Nature 504: 168-171

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Zea mays
Macromolecule	Chloroplast pentatricopeptide repeat protein 10 (protein) psaJ RNA (nucleic acid)
Unique Ligands	PO4

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4N0G	Download File View File

Crystal Structure of PYL13-PP2CA complex

Li, W., Wang, L., Sheng, X., Yan, C., Zhou, R., Hang, J., Yin, P., Yan, N.

(2013) Cell Res 23: 1369-1379

Released	2013-11-13
Method	X-RAY DIFFRACTION 2.382 Å
Organisms	Arabidopsis thaliana
Macromolecule	Abscisic acid receptor PYL13 (protein) Protein phosphatase 2C 37 (protein)
Unique Ligands	MG, ZN

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4OE1	Download File View File

Crystal structure of the pentatricopeptide repeat protein PPR10 (C256S/C430S/C449S) in complex with an 18-nt PSAJ rna element

Li, Q., Yan, C., Wu, J., Yin, P., Yan, N.

(2014) J Biol Chem 289: 31503-31512

Released	2014-09-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Zea mays
Macromolecule	Chloroplast pentatricopeptide repeat protein 10 (protein) psaJ RNA (nucleic acid)
Unique Ligands	PO4

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4OIC	Download File View File

Crystal structrual of a soluble protein

He, Y., Hao, Q., Li, W., Yan, C., Yan, N., Yin, P.

(2014) PLoS One 9: e95246-e95246

Released	2015-01-21
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Bet v I allergen-like (protein) Probable protein phosphatase 2C 6 (protein)
Unique Ligands	A8S, CL, MN, NA

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5GHE	Download File View File

Crystal Structure of Bacillus thuringiensis Cry6Aa2 Protoxin

Huang, J., Guan, Z., Zou, T., Sun, M., Yin, P.

(2016) Biochem Biophys Res Commun 478: 307-313

Released	2016-08-03
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Bacillus thuringiensis
Macromolecule	Pesticidal crystal protein Cry6Aa (protein)

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5GI0	Download File View File

Crystal structure of RNA editing factor MORF9/RIP9

Yan, J., Zhang, Q., Guan, Z., Zou, T., Yin, P.

(2017) Nat Plants 3: 17037-17037

Released	2017-05-10
Method	X-RAY DIFFRACTION 2.044 Å
Organisms	Arabidopsis thaliana
Macromolecule	Multiple organellar RNA editing factor 9, chloroplastic (protein)

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5GP0	Download File View File

Crystal structure of geraniol-NUDX1 complex

Liu, J., Guan, Z., Zou, T., Yin, P.

(2018) Mol Plant 11: 218-221

Released	2017-10-04
Method	X-RAY DIFFRACTION 1.702 Å
Organisms	Arabidopsis thaliana
Macromolecule	Nudix hydrolase 1 (protein)
Unique Ligands	GOL, GPP

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5I9D	Download File View File

Crystal structure of designed pentatricopeptide repeat protein dPPR-U8A2 in complex with its target RNA U8A2

Shen, C., Zhang, D., Guan, Z., Zou, T., Yin, P.

(2016) Nat Commun 7: 11285-11285

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.596 Å
Organisms	synthetic construct unidentified
Macromolecule	pentatricopeptide repeat protein dPPR-U8A2 (protein) RNA (5'-R(GPGPGPGUPUPUPUPAPAPUPUPUPUPCPCPCPC)-3') (nucleic acid)

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5I9G	Download File View File

Crystal structure of designed pentatricopeptide repeat protein dPPR-U8C2 in complex with its target RNA U8C2

Shen, C., Zhang, D., Guan, Z., Zou, T., Yin, P.

(2016) Nat Commun 7: 11285-11285

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.288 Å
Organisms	synthetic construct unidentified
Macromolecule	pentatricopeptide repeat protein dPPR-U8C2 (protein) RNA (5'-R(GPGPGGPUPUPUPUPCPCPUPUPUPUPCPCPCPC)-3') (nucleic acid)

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5I9H	Download File View File

Crystal structure of designed pentatricopeptide repeat protein dPPR-U8G2 in complex with its target RNA U8G2

Shen, C., Zhang, D., Guan, Z., Zou, T., Yin, P.

(2016) Nat Commun 7: 11285-11285

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.504 Å
Organisms	synthetic construct unidentified
Macromolecule	pentatricopeptide repeat protein dPPR-U8G2 (protein) RNA (5'-R(GPGPGPGPUPUPUPUPGPGPUPUPUPUPCPCPCPC)-3') (nucleic acid)

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5IL0	Download File View File

Crystal structural of the METTL3-METTL14 complex for N6-adenosine methylation

Wang, X., Guan, Z., Zou, T., Yin, P.

(2016) Nature 534: 575-578

Released	2016-05-25
Method	X-RAY DIFFRACTION 1.882 Å
Organisms	Homo sapiens
Macromolecule	METTL14 (protein) METTL3 (protein)
Unique Ligands	BR, EDO

1 to 25 of 77 Structures

Page 1 of 4

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Structure Determination Methodology

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