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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Fang, M."

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Search Summary

This query matches 43 Structures.

Refinements

Structure Determination Methodology

experimental (43)

Scientific Name of Source Organism

	Homo sapiens (16)
	synthetic construct (11)
	Coxsackievirus B1 (6)
	Enterovirus A71 (5)
	Severe acute respiratory syndrome coronavirus 2 (5)
	Arabidopsis thaliana (4)
	Coxsackievirus A16 (4)
	Mus musculus (2)
	Streptomyces lasalocidi (2)
	Streptomyces echinatus (1)

More...

Taxonomy

	Eukaryota (22)
	Riboviria (20)
	other sequences (11)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (23)
	ELECTRON MICROSCOPY (20)

Polymer Entity Type

	Protein (36)
	RNA (7)
	DNA (4)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (9)
	2.5 - 3.0 (11)
	3.0 - 3.5 (10)
	3.5 - 4.0 (9)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (3)
	2020 - 2024 (39)

Enzyme Classification Name

	Hydrolases (7)
	Transferases (6)
	Isomerases (1)

Symmetry Type

	Asymmetric (19)
	Icosahedral (14)
	Cyclic (3)
	Dihedral (1)

SCOP Classification

	All beta proteins (3)
	Alpha and beta proteins (a+b) (4)
	Artifacts (1)

AllSelected

1 to 25 of 43 Structures

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4NEC	Download File View File

Conversion of a Disulfide Bond into a Thioacetal Group during Echinomycin Biosynthesis

Hotta, K., Keegan, R.M., Ranganathan, S., Fang, M., Bibby, J., Winn, M.D., Sato, M., Lian, M., Watanabe, K., Rigden, D.J., Kim, C.-Y.

(2014) Angew Chem Int Ed Engl 53: 824-828

Released	2014-01-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces echinatus Streptomyces lasalocidi
Macromolecule	Echinomycin (protein) Putative SAM-dependent methyltransferase (protein)
Unique Ligands	15P, ACT, NA, PGE, QUI, SAH

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4RZM	Download File View File

Crystal structure of the Lsd19-lasalocid A complex

Mathews, I.I., Hotta, K., Chen, X., Kim, C.-Y.

(2015) J Am Chem Soc 137: 86-89

Released	2015-01-21
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Streptomyces lasalocidi
Macromolecule	Epoxide hydrolase LasB (protein)
Unique Ligands	CL, FMT, GOL, LSD, NA

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6AED	Download File View File

Crystal Structure of the four Ig-like domain of LILRB2(LIR2/ILT4/CD85d)

Wang, Q., Song, H., Qi, J., Gao, G.F.

(2019) Cell Mol Immunol

Released	2019-07-31
Method	X-RAY DIFFRACTION 3.797 Å
Organisms	Homo sapiens
Macromolecule	Leukocyte immunoglobulin-like receptor subfamily B member 2 (protein)

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6AEE	Download File View File

Crystal structure of the four Ig-like domains of LILRB1 complexed with HLA-G

Wang, Q., Song, H., Qi, J., Gao, G.F.

(2019) Cell Mol Immunol

Released	2019-07-31
Method	X-RAY DIFFRACTION 3.303 Å
Organisms	Homo sapiens
Macromolecule	9 Mer Peptide (RL9) From Histone H2A.x (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, alpha chain G (protein) Leukocyte immunoglobulin-like receptor subfamily B member 1 (protein)

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6UEO	Download File View File

Structure of A. thaliana TBP-AC mismatch DNA site

Schumacher, M.A.

(2020) Nature 587: 291-296

Released	2020-09-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Arabidopsis thaliana synthetic construct
Macromolecule	TATA-box-binding protein 1 (protein) DNA (5'-D(GPCPTPAPTPAPAPAPAPGPGPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPCPCPCPTPTPTPAPTPAPGPC)-3') (nucleic acid)

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6UEP	Download File View File

Structure of A. thaliana TBP bound to a DNA site with a C-C mismatch

Schumacher, M.A., Al-hashimi, H.

(2020) Nature 587: 291-296

Released	2020-09-02
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Arabidopsis thaliana synthetic construct
Macromolecule	TATA-box-binding protein 1 (protein) DNA (5'-D(GPCPTPAPTPAPAPAPCPGPGPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPCPCPCPTPTPTPAPTPAPGPC)-3') (nucleic acid)
Unique Ligands	FMT, GOL

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6UEQ	Download File View File

Structure of TBP bound to C-C mismatch containing TATA site

Schumacher, M.A., Al-Hashimi, H.

(2020) Nature 587: 291-296

Released	2020-09-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Arabidopsis thaliana synthetic construct
Macromolecule	TATA-box-binding protein 1 (protein) DNA (5'-D(GPCPTPAPTPAPAPAPAPCPGPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPCPCPTPTPTPTPAPTPAPGPC)-3') (nucleic acid)
Unique Ligands	SO4

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6UER	Download File View File

Crystal form 2: Structure of TBP bound to C-C mismatch at pH 7

Schumacher, M.A., Al-Hashimi, H.

(2020) Nature 587: 291-296

Released	2020-09-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana synthetic construct
Macromolecule	TATA-box-binding protein 1 (protein) DNA (5'-D(GPCPTPAPTPAPAPAPCPGPGPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPCPCPCPTPTPTPAPTPAPGPC)-3') (nucleic acid)

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6X61	Download File View File

Crystal structure of the N-terminal thioredoxin domain of SasA in complex with the N-terminal CI domain of KaiC from Thermosynchococcus elongatus

Swan, J.A., Tripathi, S.M., Partch, C.L.

(2021) Science 374: eabd4453-eabd4453

Released	2021-06-02
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Adaptive-response sensory-kinase SasA (protein) Circadian clock protein kinase KaiC (protein)
Unique Ligands	PO4

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7CHO	Download File View File

Crystal structure of SARS-CoV-2 antibody P5A-1D2 with RBD

Wang, X., Zhang, L., Ge, J., Wang, R., Zhang, Q.

(2021) Nat Commun 12: 4210-4210

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.561 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike protein S1 (protein) antibody P5A-1D2 heavy chain (protein) antibody P5A-1D2 light chain (protein)
Unique Ligands	NAG

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7CHP	Download File View File

Crystal structure of SARS-CoV-2 antibody P5A-3C8 with RBD

Wang, X., Zhang, L., Ge, J., Wang, R., Zhang, Q.

(2021) Nat Commun 12: 4210-4210

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.357 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike protein S1 (protein) antibody P5A-3C8 heavy chain (protein) antibody P5A-3C8 light chain (protein)
Unique Ligands	NAG

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7CHS	Download File View File

Crystal structure of SARS-CoV-2 antibody P22A-1D1 with RBD

Wang, X., Zhang, L., Ge, J., Wang, R., Zhang, Q.

(2021) Nat Commun 12: 4210-4210

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.401 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike protein S1 (protein) antibody P22A-1D1 heavy chain (protein) antibody P22A-1D1 light chain (protein)
Unique Ligands	NAG

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7DPF	Download File View File

Cryo-EM structure of Coxsackievirus B1 mature virion

Zheng, Q., Li, S.

(2021) Cell Host Microbe 29: 448-462.e5

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Coxsackievirus B1
Macromolecule	Capsid protein VP4 (protein) VP2 (protein) VP3 (protein) Virion protein 1 (protein)
Unique Ligands	PLM

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7DPG	Download File View File

Cryo-EM structure of Coxsackievirus B1 empty particle

Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q., Xia, N.

(2021) Cell Host Microbe 29: 448-462.e5

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Coxsackievirus B1
Macromolecule	VP2 (protein) VP3 (protein) Virion protein 1 (protein)

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7DPZ	Download File View File

Cryo-EM structure of Coxsackievirus B1 virion in complex with CAR

Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q.

(2021) Cell Host Microbe 29: 448-462.e5

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Coxsackievirus B1 Homo sapiens
Macromolecule	Capsid protein VP4 (protein) Coxsackievirus and adenovirus receptor (protein) VP2 (protein) VP3 (protein) Virion protein 1 (protein)

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7DQ1	Download File View File

Cryo-EM structure of Coxsackievirus B1 virion in complex with CAR at physiological temperature

Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q.

(2021) Cell Host Microbe 29: 448-462.e5

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Coxsackievirus B1 Homo sapiens
Macromolecule	Capsid protein VP4 (protein) Coxsackievirus and adenovirus receptor (protein) VP2 (protein) VP3 (protein) Virion protein 1 (protein)

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7DQ4	Download File View File

Cryo-EM structure of CAR triggered Coxsackievirus B1 A-particle

Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q.

(2021) Cell Host Microbe 29: 448-462.e5

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Coxsackievirus B1
Macromolecule	VP2 (protein) VP3 (protein) Virion protein 1 (protein)

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7DQ7	Download File View File

Cryo-EM structure of Coxsackievirus B1 mature virion in complex with nAb 5F5

Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q.

(2021) Cell Host Microbe 29: 448-462.e5

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Coxsackievirus B1 Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	PLM

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7FAE	Download File View File

S protein of SARS-CoV-2 in complex bound with P36-5D2(state2)

Zhang, L., Wang, X., Shan, S., Zhang, S.

(2021) Front Immunol 12: 766821-766821

Released	2021-12-22
Method	ELECTRON MICROSCOPY 3.65 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	P36-5D2 heavy chain (protein) P36-5D2 light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7FAF	Download File View File

S protein of SARS-CoV-2 in complex bound with P36-5D2 (state1)

Zhang, L., Wang, X., Zhang, S., Shan, S.

(2021) Front Immunol 12: 766821-766821

Released	2021-12-22
Method	ELECTRON MICROSCOPY 3.69 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	P36-5D2 heavy chain (protein) P36-5D2 light chain (protein) Spike glycoprotein (protein)

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7YFK	Download File View File

The structure of human pregnane X receptor in complex with an SRC-1 coactivator peptide and a limonoid compound, nomilin

Xia, Y., Yao, D., Huang, C., Cao, Y.

(2023) Nat Commun 14: 3368-3368

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor subfamily 1 group I member 2,Nuclear receptor coactivator 1 (protein)
Unique Ligands	G3L

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7YSH	Download File View File

Cryo-EM Structure of FGF23-FGFR1c-aKlotho-HS Quaternary Complex

Mohammadi, M., Chen, L.

(2023) Nature 618: 862-870

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.74 Å
Organisms	Homo sapiens
Macromolecule	Fibroblast growth factor 23 (protein) Isoform 20 of Fibroblast growth factor receptor 1 (protein) Klotho (protein)
Unique Ligands	CU, ZN
Unique branched monosaccharides	IDS, SGN

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7YSU	Download File View File

Cryo-EM Structure of FGF23-FGFR3c-aKlotho-HS Quaternary Complex

Mohammadi, M., Chen, L.

(2023) Nature 618: 862-870

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Fibroblast growth factor 23 (protein) Fibroblast growth factor receptor 3 (protein) Klotho (protein)
Unique Ligands	CU, ZN
Unique branched monosaccharides	IDS, SGN

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7YSW	Download File View File

Cryo-EM Structure of FGF23-FGFR4-aKlotho-HS Quaternary Complex

Mohammadi, M., Chen, L.

(2023) Nature 618: 862-870

Released	2023-06-14
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Homo sapiens
Macromolecule	Fibroblast growth factor 23 (protein) Fibroblast growth factor receptor 4 (protein) Klotho (protein)
Unique Ligands	CU, ZN
Unique branched monosaccharides	IDS, SGN

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8HZD	Download File View File

A new fluorescent RNA aptamer bound with N618

Song, Q.Q., Ren, A.M.

(2024) Nat Chem Biol 20: 1453-1460

Released	2024-06-19
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	synthetic construct
Macromolecule	RNA (36-MER) (nucleic acid)
Unique Ligands	MG, O2I

1 to 25 of 43 Structures

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