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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kulkarni, K."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Homo sapiens (12)
	synthetic construct (8)
	Catharanthus roseus (3)
	Escherichia coli (2)
	Xenopus laevis (2)
	Eremothecium gossypii ATCC 10895 (1)
	Methanococcus maripaludis (1)
	Methanosarcina acetivorans (1)
	Mus musculus (1)
	Saccharomyces cerevisiae (1)

More...

Taxonomy

	Eukaryota (21)
	other sequences (8)
	Archaea (2)
	Bacteria (2)

Experimental Method

X-RAY DIFFRACTION (24)

Polymer Entity Type

Protein (24)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (9)
	2.5 - 3.0 (5)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (2)
	2010 - 2014 (4)
	2015 - 2019 (14)
	2020 - 2024 (4)

Enzyme Classification Name

	Oxidoreductases (5)
	Hydrolases (2)
	Transferases (1)

Membrane Protein Annotation

	MemProtMD (2)
	OPM (2)
	PDBTM (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (16)
	Cyclic (8)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	Artifacts (4)
	All beta proteins (2)
	All alpha proteins (2)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 24 of 24 Structures

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1NXU	Download File View File

CRYSTAL STRUCTURE OF E. COLI HYPOTHETICAL OXIDOREDUCTASE YIAK NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER82.

Forouhar, F., Lee, I., Benach, J., Kulkarni, K., Xiao, R., Acton, T.B., Shastry, R., Rost, B., Montelione, G.T., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2004) J Biol Chem 279: 13148-13155

Released	2003-03-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	Hypothetical oxidoreductase yiaK (protein)
Unique Ligands	SO4

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1S20	Download File View File

A novel NAD binding protein revealed by the crystal structure of E. Coli 2,3-diketogulonate reductase (YiaK) NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER82

Forouhar, F., Lee, I., Benach, J., Kulkarni, K., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2004) J Biol Chem 279: 13148-13155

Released	2004-01-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Hypothetical oxidoreductase yiaK (protein)
Unique Ligands	NAD, TLA

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2YIN	Download File View File

STRUCTURE OF THE COMPLEX BETWEEN Dock2 AND Rac1.

Kulkarni, K.A., Yang, J., Zhang, Z., Barford, D.

(2011) J Biol Chem 286: 25341

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	DEDICATOR OF CYTOKINESIS PROTEIN 2 (protein) RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1 (protein)

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4A2N	Download File View File

Crystal Structure of Ma-ICMT

Yang, J., Kulkarni, K., Manolaridis, I., Zhang, Z., Dodd, R.B., Mas-Droux, C., Barford, D.

(2011) Mol Cell 44: 997

Released	2012-01-11
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Methanosarcina acetivorans
Macromolecule	ISOPRENYLCYSTEINE CARBOXYL METHYLTRANSFERASE (protein)
Unique Ligands	CDL, PLM, SAH

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4ADY	Download File View File

Crystal structure of 26S proteasome subunit Rpn2

Kulkarni, K., He, J., Da Fonseca, P.C.A., Krutauz, D., Glickman, M.H., Barford, D., Morris, E.P.

(2012) Structure 20: 513

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	26S PROTEASOME REGULATORY SUBUNIT RPN2 (protein)

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4CAD	Download File View File

Mechanism of farnesylated CAAX protein processing by the integral membrane protease Rce1

Kulkarni, K., Manolaridis, I., Dodd, R.B., Cronin, N., Ogasawara, S., Iwata, S., Barford, D.

(2013) Nature 504: 301

Released	2013-11-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Methanococcus maripaludis Mus musculus
Macromolecule	ANTIBODY FAB FRAGMENT HEAVY CHAIN (protein) ANTIBODY FAB FRAGMENT LIGHT CHAIN (protein) RAS AND A-FACTOR CONVERTING ENZYME 1, RCE1 (protein)
Unique Ligands	BOG, LMT

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4WWQ	Download File View File

Apo structure of the Grb7 SH2 domain

Watson, G.M., Ambaye, N.D., Wilce, M.C., Wilce, J.A.

(2015) J Med Chem 58: 7707-7718

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Growth factor receptor-bound protein 7 (protein)
Unique Ligands	MLA

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4X6S	Download File View File

Grb7 SH2 domain with phosphotyrosine mimetic inhibitor peptide

Watson, G.M., Panjikar, S., Wilce, M.C., Wilce, J.A.

(2015) J Med Chem 58: 7707-7718

Released	2015-09-23
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Growth factor receptor-bound protein 7 (protein) Phosphotyrosine mimetic inhibitor peptide G7-TEM1 (protein)

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5BPT	Download File View File

Atomic-resolution structures of the APC/C subunits Apc4 and the Apc5 N-terminal domain

Cronin, N., Yang, J., Zhang, Z., Barford, D.

(2015) J Mol Biol 427: 3300-3315

Released	2015-09-02
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Xenopus laevis
Macromolecule	MGC81278 protein (protein)

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5BPW	Download File View File

Atomic-resolution structures of the APC/C subunits Apc4 and the Apc5 N-terminal domain

Kulkarni, K., Yang, J., Zhang, Z., Barford, D.

(2015) J Mol Biol 427: 3300-3315

Released	2015-09-02
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 4 (protein)

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5BPZ	Download File View File

Atomic-resolution structures of the APC/C subunits Apc4 and the Apc5 N-terminal domain

Cronin, N., Yang, J., Zhang, Z., Barford, D.

(2015) J Mol Biol 427: 3300-3315

Released	2015-09-02
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Xenopus laevis
Macromolecule	Anapc5 protein (protein)
Unique Ligands	EDO

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5D0J	Download File View File

Grb7 SH2 with inhibitor peptide

Gunzburg, M.J., Watson, G.M., Wilce, J.A., Wilce, M.C.J.

(2016) Sci Rep 6: 27060-27060

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	G7-TEdFP peptide (protein) Growth factor receptor-bound protein 7 (protein)
Unique Ligands	PO4

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5EEL	Download File View File

Grb7 SH2 with bicyclic peptide inhibitor

Watson, G.M., Gunzburg, M.J., Wilce, M.C.J., Wilce, J.A.

(2016) Sci Rep 6: 27060-27060

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Bicyclic Peptide Inhibitor (protein) Growth factor receptor-bound protein 7 (protein)
Unique Ligands	FMT, MLA, NA

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5EEQ	Download File View File

Grb7 SH2 with the G7-B1 bicyclic peptide inhibitor

Ambaye, N.D., Watson, G.M., Wilce, M.C.J., Wilce, G.M.

(2016) Sci Rep 6: 27060-27060

Released	2016-06-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Bicyclic Peptide Inhibitor (protein) Growth factor receptor-bound protein 7 (protein)
Unique Ligands	PO4

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5EMH	Download File View File

Crystal structure of Iridoid Synthase from Cantharanthus roseus in complex with NADP+

Sandholu, A., Thulasiram, H.V., Kulkarni, K.A.

(2018) FEBS Lett 592: 2624-2635

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Catharanthus roseus
Macromolecule	Iridoid synthase (protein)
Unique Ligands	NAP

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5TYI	Download File View File

Grb7 SH2 with bicyclic peptide containing pY mimetic

Watson, G.M., Wilce, M.C.J., Wilce, J.A.

(2017) J Med Chem 60: 9349-9359

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Growth factor receptor-bound protein 7 (protein) Peptide inhibitor (protein)

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5U06	Download File View File

Grb7-SH2 with bicyclic peptide inhibitor containing a pY mimetic

Watson, G.M., Wilce, J.A.

(2017) J Med Chem 60: 9349-9359

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Growth factor receptor-bound protein 7 (protein) bicyclic peptide inhibitor: LYS-PHE-GLU-GLY-CMF-ASP-ASN-GLU-CST (protein)
Unique Ligands	K

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5U1Q	Download File View File

Grb7-SH2 with bicyclic peptide inhibitor

Watson, G.M., Wilce, M.C.J., Wilce, J.A.

(2017) J Med Chem 60: 9349-9359

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Growth factor receptor-bound protein 7 (protein) LYS-PHE-GLU-GLY-TYR-ASP-ASN-GLU-CST (protein)
Unique Ligands	CL

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6A8M	Download File View File

N-terminal domain of FACT complex subunit SPT16 from Eremothecium gossypii (Ashbya gossypii)

Gaur, N.K., Are, V.N., Durani, V., Ghosh, B., Kumar, A., Kulkarni, K., Makde, R.D.

(2021) J Biomol Struct Dyn 1-13

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Eremothecium gossypii ATCC 10895
Macromolecule	FACT complex subunit SPT16 (protein)

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6K16	Download File View File

Crystal Structure of Sesquisabinene B Synthase 1 from Santalum album

Singh, S., Thulasiram, H.V., Kulkarni, K.A.

(2021) Biochem Biophys Res Commun 536: 107-114

Released	2019-06-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Santalum album
Macromolecule	Sesquisabinene B synthase 1 (protein)
Unique Ligands	MG

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6K3G	Download File View File

Crystal structure of 10-Hydroxygeraniol Dehydrogenase from Cantharanthus roseus in complex with NADP+

Sandholu, A.S., Sharmila, P.M., Thulasiram, H.V., Kulkarni, K.A.

(2020) Proteins 88: 1197-1206

Released	2020-03-25
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Catharanthus roseus
Macromolecule	10-hydroxygeraniol oxidoreductase (protein)
Unique Ligands	NAP, ZN

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6KJ5	Download File View File

Crystal structure of 10-Hydroxygeraniol Dehydrogenase apo form from Cantharanthus roseus

Sandholu, A.S., Sharmila, P.M., Thulasiram, H.V., Kulkarni, K.A.

(2020) Proteins 88: 1197-1206

Released	2020-03-25
Method	X-RAY DIFFRACTION 3.75 Å
Organisms	Catharanthus roseus
Macromolecule	10-hydroxygeraniol dehydrogenase (protein)
Unique Ligands	ZN

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8WWR	Download File View File

Crystal structure of apo human dishevelled 2 (Dvl2) PDZ domain

Omble, A., Mahajan, S., Kulkarni, K.A.

(2024) Commun Biol 7: 543-543

Released	2024-05-29
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Segment polarity protein dishevelled homolog DVL-2 (protein)

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8YR7	Download File View File

Crystal structure of human dishevelled 2 (Dvl2) PDZ domain fused with WGEF internal peptide motif

Omble, A., Mahajan, S., Kulkarni, K.A.

(2024) Commun Biol 7: 543-543

Released	2024-05-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Segment polarity protein dishevelled homolog DVL-2,Rho guanine nucleotide exchange factor 19 (protein)

1 to 24 of 24 Structures

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