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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Li, X.F."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Homo sapiens (10)
	Severe acute respiratory syndrome coronavirus 2 (10)
	Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) (2)
	Mus musculus (2)
	Influenza A virus (A/Viet Nam/1203/2004(H5N1)) (1)
	Japanese encephalitis virus (1)

Taxonomy

	Riboviria (14)
	Eukaryota (12)

Experimental Method

	ELECTRON MICROSCOPY (11)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (2)
	3.5 - 4.0 (9)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (1)
	2020 - 2024 (11)

Enzyme Classification Name

Transferases (1)

Symmetry Type

	Asymmetric (10)
	Cyclic (6)
	Icosahedral (1)

SCOP Classification

	All beta proteins (1)
	Artifacts (1)
	Coiled coil proteins (1)

AllSelected

1 to 15 of 15 Structures

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4MHH	Download File View File

Crystal structure of Fab H5M9 in complex with influenza virus hemagglutinin from A/Viet Nam/1203/2004 (H5N1)

Zhu, X., Wilson, I.A.

(2013) J Virol 87: 12619-12635

Released	2013-10-02
Method	X-RAY DIFFRACTION 3.564 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1)) Mus musculus
Macromolecule	H5M9 antibody, heavy chain (IgG1) (protein) H5M9 antibody, light chain (kappa) (protein) Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	MAN, NAG

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4MHI	Download File View File

Crystal structure of a H5N1 influenza virus hemagglutinin from A/goose/Guangdong/1/96

Zhu, X., Wilson, I.A.

(2013) J Virol 87: 12619-12635

Released	2013-10-02
Method	X-RAY DIFFRACTION 2.595 Å
Organisms	Influenza A virus (A/goose/Guangdong/1/1996(H5N1))
Macromolecule	Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	MAN, NAG

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4MHJ	Download File View File

Crystal structure of Fab H5M9 in complex with influenza virus hemagglutinin from A/goose/Guangdong/1/96 (H5N1)

Zhu, X., Wilson, I.A.

(2013) J Virol 87: 12619-12635

Released	2013-10-02
Method	X-RAY DIFFRACTION 6.98 Å
Organisms	Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) Mus musculus
Macromolecule	H5M9 antibody, heavy chain (IgG1) (protein) H5M9 antibody, light chain (kappa) (protein) Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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5WSN	Download File View File

Structure of Japanese encephalitis virus

Wang, X., Zhu, L., Li, S., Yuan, S., Qin, C., Fry, E.E., Stuart, I.D., Rao, Z.

(2017) Nat Commun 8: 14-14

Released	2017-05-17
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Japanese encephalitis virus
Macromolecule	E protein (protein) M protein (protein)

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7CAB	Download File View File

Structural basis for neutralization of SARS-CoV-2 and SARS-CoV by a potent therapeutic antibody

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2020-12-16
Method	ELECTRON MICROSCOPY 3.52 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7CAC	Download File View File

SARS-CoV-2 S trimer with one RBD in the open state and complexed with one H014 Fab.

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2021-02-24
Method	ELECTRON MICROSCOPY 3.55 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H014 Fab (protein) Light chain of H014 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7CAH	Download File View File

The interface of H014 Fab binds to SARS-CoV-2 S

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Rao, Z., wang, Y., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2020-08-12
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H014 Fab (protein) Light chain of H014 Fab (protein) Spike protein S1 (protein)

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7CAI	Download File View File

SARS-CoV-2 S trimer with two RBDs in the open state and complexed with two H014 Fab

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2020-09-23
Method	ELECTRON MICROSCOPY 3.49 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H014 Fab (protein) Light chain of H014 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7CAK	Download File View File

SARS-CoV-2 S trimer with three RBD in the open state and complexed with three H014 Fab

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2020-09-23
Method	ELECTRON MICROSCOPY 3.58 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H014 Fab (protein) Light chain of H014 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7CWL	Download File View File

SARS-CoV-2 spike protein and P17 fab complex with one RBD in close state

Wang, X., Wang, N.

(2021) Cell Res 31: 25-36

Released	2021-01-27
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Fab P17 heavy chain (protein) Fab P17 light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG

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7CWM	Download File View File

Complex of SARS-CoV-2 spike protein and Fab P17 with one RBD in open state and two RBD in closed state

Wang, N., Wang, X.

(2021) Cell Res 31: 25-36

Released	2020-12-16
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	P17 heavy chain (protein) P17 light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7CWN	Download File View File

P17-H014 Fab cocktail in complex with SARS-CoV-2 spike protein

Wang, N., Wang, X.

(2021) Cell Res 31: 25-36

Released	2020-12-16
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein) heavy chain of H014 Fab (protein) heavy chain of P17 Fab (protein) light chain of H014 Fab (protein) light chain of P17 Fab (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7CWO	Download File View File

SARS-CoV-2 spike protein RBD and P17 fab complex

Wang, X., Wang, N.

(2021) Cell Res 31: 25-36

Released	2020-12-16
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein) heavy chain of P17 Fab (protein) light chain of P17 Fab (protein)

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7CYP	Download File View File

Complex of SARS-CoV-2 spike trimer with its neutralizing antibody HB27

Wang, X., Zhu, L.

(2021) Natl Sci Rev 8: nwaa297-nwaa297

Released	2021-06-09
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of HB27 (protein) Light chain of HB27 (protein) SARS-CoV-2 Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7NG7	Download File View File

Src kinase bound to eCF506 trapped in inactive conformation

Lietha, D., Unciti-Broceta, A.

(2021) Cancer Res 81: 5438-5450

Released	2021-09-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Proto-oncogene tyrosine-protein kinase Src (protein)
Unique Ligands	EDO, UCW

1 to 15 of 15 Structures

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