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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Thompson, L.E."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Pyrococcus furiosus (7)
	Homo sapiens (6)
	Bos taurus (5)
	Plasmodium falciparum 3D7 (5)
	Aequorea victoria (1)
	Escherichia coli (1)
	Escherichia coli K-12 (1)
	Saccharomyces cerevisiae (1)
	Saccharomyces cerevisiae S288C (1)
	Thermus aquaticus (1)

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Taxonomy

	Eukaryota (18)
	Archaea (7)
	Bacteria (3)
	Eukaryota (eukaryotes) (2)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (27)

Polymer Entity Type

Protein (27)

Refinement Resolution (Å)

	1.5 - 2.0 (14)
	2.0 - 2.5 (7)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (8)
	2010 - 2014 (11)
	2015 - 2019 (2)

Enzyme Classification Name

	Hydrolases (14)
	Transferases (6)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)
	mpstruc (2)
	OPM (1)

Symmetry Type

	Asymmetric (20)
	Cyclic (10)
	Dihedral (4)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	All beta proteins (2)
	All alpha proteins (5)
	Artifacts (4)
	Alpha and beta proteins (a+b) (2)
	Membrane and cell surface proteins and peptides (2)

AllSelected

1 to 25 of 27 Structures

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1FBY	Download File View File

CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMAIN BOUND TO 9-CIS RETINOIC ACID

Egea, P.F., Mitschler, A., Rochel, N., Ruff, M., Chambon, P., Moras, D.

(2000) EMBO J 19: 2592-2601

Released	2000-07-28
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	RETINOIC ACID RECEPTOR RXR-ALPHA (protein)
Unique Ligands	9CR

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1MV9	Download File View File

Crystal Structure of the human RXR alpha ligand binding domain bound to the eicosanoid DHA (Docosa Hexaenoic Acid) and a coactivator peptide

Egea, P.F., Mitschler, A., Moras, D.

(2002) Mol Endocrinol 16: 987-997

Released	2002-10-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) RXR retinoid X receptor (protein)
Unique Ligands	HXA

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1MVC	Download File View File

Crystal structure of the human RXR alpha ligand binding domain bound to the synthetic agonist compound BMS 649 and a coactivator peptide

Egea, P.F., Mitschler, A., Moras, D.

(2002) Mol Endocrinol 16: 987-997

Released	2002-10-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) RXR retinoid X receptor (protein)
Unique Ligands	BM6

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1MZN	Download File View File

CRYSTAL STRUCTURE at 1.9 ANGSTROEMS RESOLUTION OF THE HOMODIMER OF HUMAN RXR ALPHA LIGAND BINDING DOMAIN BOUND TO THE SYNTHETIC AGONIST COMPOUND BMS 649 AND A COACTIVATOR PEPTIDE

Egea, P.F., Mitschler, A., Moras, D.

(2002) Mol Endocrinol 16: 987-997

Released	2002-10-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Nuclear receptor coactivator 2 (protein) RXR retinoid X receptor (protein)
Unique Ligands	BM6

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1RC2	Download File View File

2.5 Angstrom Resolution X-ray Structure of Aquaporin Z

Savage, D.F., Egea, P.F., Robles, Y.C., O'Connell III, J.D., Stroud, R.M.

(2003) PLoS Biol 1: 334-340

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Aquaporin Z (protein)
Unique Ligands	BGL

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1RJ9	Download File View File

Structure of the heterodimer of the conserved GTPase domains of the Signal Recognition Particle (Ffh) and Its Receptor (FtsY)

Egea, P.F., Shan, S.O., Napetschnig, J., Savage, D.F., Walter, P., Stroud, R.M.

(2004) Nature 427: 215-221

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus aquaticus
Macromolecule	Signal Recognition Protein (protein) Signal recognition particle protein (protein)
Unique Ligands	GCP, MG

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3BN9	Download File View File

Crystal Structure of MT-SP1 in complex with Fab Inhibitor E2

Farady, C.J., Schneider, E.L., Egea, P.F., Goetz, D.H., Craik, C.S.

(2008) J Mol Biol 380: 351-360

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.173 Å
Organisms	Homo sapiens
Macromolecule	E2 Fab Heavy Chain (protein) E2 Fab Light Chain (protein) Membrane-type serine protease 1 (protein)
Unique Ligands	EDO, SO4

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3DLU	Download File View File

Structures of SRP54 and SRP19, the two proteins assembling the ribonucleic core of the Signal Recognition Particle from the archaeon Pyrococcus furiosus.

Egea, P.F., Napetschnig, J., Walter, P., Stroud, R.M.

(2008) PLoS One 3: e3528-e3528

Released	2008-11-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pyrococcus furiosus
Macromolecule	Signal recognition particle 19 kDa protein (protein)
Unique Ligands	BR, MLI

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3DLV	Download File View File

Structures of SRP54 and SRP19, the two proteins assembling the ribonucleic core of the Signal Recognition Particle from the archaeon Pyrococcus furiosus.

Egea, P.F., Napetschnig, J., Walter, P., Stroud, R.M.

(2008) PLoS One 3: e3528-e3528

Released	2008-11-04
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Pyrococcus furiosus
Macromolecule	Signal recognition particle 19 kDa protein (protein)

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3DM5	Download File View File

Structures of SRP54 and SRP19, the two proteins assembling the ribonucleic core of the Signal Recognition Particle from the archaeon Pyrococcus furiosus.

Egea, P.F., Napetschnig, J., Walter, P., Stroud, R.M.

(2008) PLoS One 3: e3528-e3528

Released	2008-11-04
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Pyrococcus furiosus
Macromolecule	Signal recognition 54 kDa protein (protein)
Unique Ligands	ACT, GDP, SO4

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3DM9	Download File View File

Structures and Conformations in Solution of the Signal Recognition Particle Receptor from the archaeon Pyrococcus furiosus

Egea, P.F., Tsuruta, H., Napetschnig, J., Walter, P., Stroud, R.M.

(2008) PLoS One 3: e3619-e3619

Released	2008-11-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus furiosus
Macromolecule	Signal recognition particle receptor (protein)
Unique Ligands	MPD, PO4

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3DMD	Download File View File

Structures and Conformations in Solution of the Signal Recognition Particle Receptor from the archaeon Pyrococcus furiosus

Egea, P.F., Tsuruta, H., Napetschnig, J., Walter, P., Stroud, R.M.

(2008) PLoS One 3: e3619-e3619

Released	2008-11-11
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Pyrococcus furiosus
Macromolecule	Signal recognition particle receptor (protein)
Unique Ligands	GOL, SO4

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3E70	Download File View File

Structures and conformations in solution of the Signal Recognition Particle Receptor from the Archaeon Pyrococcus Furiosus

Egea, P.F., Tsuruta, H., Napetschnig, J., Walter, P., Stroud, R.M.

(2008) PLoS One 3: e3619-e3619

Released	2008-11-18
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Pyrococcus furiosus
Macromolecule	Signal recognition particle receptor (protein)
Unique Ligands	GDP, MG

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3FBV	Download File View File

Crystal structure of the oligomer formed by the kinase-ribonuclease domain of Ire1

Korennykh, A.V., Egea, P.F., Korostelev, A.A., Finer-Moore, J., Zhang, C., Shokat, K.M., Stroud, R.M., Walter, P.

(2009) Nature 457: 687-693

Released	2008-12-16
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Serine/threonine-protein kinase/endoribonuclease IRE1 (protein)
Unique Ligands	APJ

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3GC6	Download File View File

Structural insights into the catalytic mechanism of CD38: Evidence for a conformationally flexible covalent enzyme-substrate complex.

Egea, P.F., Muller-Steffner, H., Stroud, R.M., Oppenheimer, N., Kellenberger, E., Schuber, F.

(2012) PLoS One 7: e34918-e34918

Released	2010-03-02
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Bos taurus
Macromolecule	Ecto-NAD+ glycohydrolase (CD38 molecule) (protein)
Unique Ligands	SO4
Unique branched monosaccharides	NAG

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3GH3	Download File View File

Structural insights into the catalytic mechanism of CD38: Evidence for a conformationally flexible covalent enzyme-substrate complex.

Egea, P.F., Muller-Steffner, H., Stroud, R.M., Kellenberger, E., Oppenheimer, N., Schuber, F.

(2012) PLoS One 7: e34918-e34918

Released	2010-03-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	Ecto-NAD+ glycohydrolase (CD38 molecule) (protein)
Unique Ligands	CAC, SO4
Unique branched monosaccharides	NAG

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3GHH	Download File View File

Structural insights into the catalytic mechanism of CD38: Evidence for a conformationally flexible covalent enzyme-substrate complex.

Egea, P.F., Muller-Steffner, H., Stroud, R.M., Oppenheimer, N.J., Kellenberger, E., Schuber, F.

(2012) PLoS One 7: e34918-e34918

Released	2010-03-16
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Bos taurus
Macromolecule	Ecto-NAD+ glycohydrolase (CD38 molecule) (protein)
Unique Ligands	2NF, SO4
Unique branched monosaccharides	NAG

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3KOU	Download File View File

Structural insights into the catalytic mechanism of CD38: Evidence for a conformationally flexible covalent enzyme-substrate complex.

Egea, P.F., Muller-Steffner, H., Stroud, R.M., Oppenheimer, N.J., Kellenberger, E., Schuber, F.

(2012) PLoS One 7: e34918-e34918

Released	2010-10-27
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Bos taurus
Macromolecule	CD38 molecule (protein)
Unique Ligands	2NF, NAG, SO4
Unique branched monosaccharides	NAG

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3MP7	Download File View File

Lateral opening of a translocon upon entry of protein suggests the mechanism of insertion into membranes

Egea, P.F., Stroud, R.M., Center for Structures of Membrane Proteins (CSMP)

(2010) Proc Natl Acad Sci U S A 107: 17182-17187

Released	2010-10-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pyrococcus furiosus
Macromolecule	Preprotein translocase subunit secE (protein) Preprotein translocase subunit secY (protein)

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3P5S	Download File View File

Structural insights into the catalytic mechanism of CD38: Evidence for a conformationally flexible covalent enzyme-substrate complex

Egea, P.F., Muller-Stauffler, H., Kohn, I., Cakou-Kefir, C., Stroud, R.M., Kellenberburger, E., Schuber, F.

(2012) PLoS One 7: e34918-e34918

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bos taurus
Macromolecule	CD38 molecule (protein)
Unique Ligands	AVU, NAG, SO4

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3SO3	Download File View File

Structures of Fab-Protease Complexes Reveal a Highly Specific Non-Canonical Mechanism of Inhibition.

Schneider, E.L., Farady, C.J., Egea, P.F., Goetz, D.H., Baharuddin, A., Craik, C.S.

(2012) J Mol Biol 415: 699-715

Released	2012-06-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	A11 FAB heavy chain (protein) A11 FAB light chain (protein) Suppressor of tumorigenicity 14 protein (protein)
Unique Ligands	GOL
Unique branched monosaccharides	FRU, GLC

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4IOD	Download File View File

Preliminary structural investigations of a malarial protein secretion system.

Egea, P.F.

(2015) Protein Sci 24: 1508-1520

Released	2014-04-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Malarial CLP B2 atpase/HSP101 protein (protein)
Unique Ligands	SO4

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4IRF	Download File View File

Preliminary structural investigations of a malarial protein secretion system

Egea, P.F.

(2015) Protein Sci 24: 1508-1520

Released	2014-04-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	MALARIAL CLPB2 ATPASE/HSP101 PROTEIN (protein)

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4O2X	Download File View File

Structure of a malarial protein

AhYoung, A.P., Koehl, A., Cascio, D., Egea, P.F.

(2016) Protein Sci 25: 689-701

Released	2014-12-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12 Plasmodium falciparum 3D7
Macromolecule	Maltose-binding periplasmic protein, ATP-dependent Clp protease adaptor protein ClpS containing protein chimeric construct (protein)

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4O32	Download File View File

Structure of a malarial protein

Egea, P.F., Koehl, A., Peng, M., Cascio, D.

(2015) Biochem Biophys Res Commun 456: 403-409

Released	2014-12-24
Method	X-RAY DIFFRACTION 2.196 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Thioredoxin (protein)
Unique Ligands	CL

1 to 25 of 27 Structures

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