RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Zhou, B.L."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Sulfolobus acidocaldarius DSM 639 (6)
	Saccharolobus solfataricus P2 (5)
	synthetic construct (5)
	Sulfolobus acidocaldarius (4)
	Saccharolobus solfataricus (3)
	Human immunodeficiency virus type 1 BH10 (1)

Taxonomy

	Archaea (13)
	other sequences (5)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

	Protein (14)
	DNA (12)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (6)
	2.5 - 3.0 (5)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (3)
	2010 - 2014 (9)

Enzyme Classification Name

Transferases (14)

Symmetry Type

Asymmetric (14)

SCOP Classification

	Multi-domain proteins (alpha and beta) (8)
	Alpha and beta proteins (a+b) (6)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 14 of 14 Structures

Page 1 of 1

Sort by

Explore in 3D

1IM4	Download File View File

Crystal Structure of a DinB Homolog (DBH) Lesion Bypass DNA Polymerase Catalytic Fragment from Sulfolobus solfataricus

Pata, J.D., Zhou, B.L., Steitz, T.A.

(2001) Mol Cell 8: 427-437

Released	2001-09-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DBH (protein)
Unique Ligands	SO4

Explore in 3D

1TV6	Download File View File

HIV-1 Reverse Transcriptase Complexed with CP-94,707

Pata, J.D., Stirtan, W.G., Goldstein, S.W., Steitz, T.A.

(2004) Proc Natl Acad Sci U S A 101: 10548-10553

Released	2004-07-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus type 1 BH10
Macromolecule	reverse transcriptase p51 subunit (protein) reverse transcriptase p66 subunit (protein)
Unique Ligands	CP9

Explore in 3D

3BQ0	Download File View File

Pre-insertion binary complex of Dbh DNA polymerase

Pata, J.D., Wilson, R.C.

(2008) Mol Cell 29: 767-779

Released	2008-04-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Sulfolobus acidocaldarius synthetic construct
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(DGPDAPDAPDGPDCPDCPDGPDGPDCPDG)-3') (nucleic acid) DNA (5'-D(DTDTPDCPDCPDGPDCPDCPDCPDGPDGPDCPDTPDTPDCP*DC)-3') (nucleic acid)
Unique Ligands	CA

Explore in 3D

3BQ1	Download File View File

Insertion ternary complex of Dbh DNA polymerase

Pata, J.D., Wilson, R.C.

(2008) Mol Cell 29: 767-779

Released	2008-04-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(DGPDAPDAPDGPDCPDCPDGPDGPDCPDG)-3') (nucleic acid) DNA (5'-D(DTDTPDCPDCPDGPDCPDCPDCPDGPDGPDCPDTPDTPDCP*DC)-3') (nucleic acid)
Unique Ligands	CA, DG3

Explore in 3D

3BQ2	Download File View File

Post-insertion binary complex of Dbh DNA polymerase

Pata, J.D., Wilson, R.C.

(2008) Mol Cell 29: 767-779

Released	2008-04-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Sulfolobus acidocaldarius synthetic construct
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(DGPDAPDAPDGPDCPDCPDGPDGPDCPDGPDG)-3') (nucleic acid) DNA (5'-D(DTPDTPDCPDCPDGPDCPDCPDCPDGPDGPDCPDTPDTPDCPDC)-3') (nucleic acid)
Unique Ligands	CA

Explore in 3D

3QZ7	Download File View File

T-3 ternary complex of Dpo4

Pata, J.D., Wu, Y., Wilson, R.C.

(2011) J Bacteriol 193: 2630-2636

Released	2011-04-06
Method	X-RAY DIFFRACTION 1.998 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DNA polymerase IV (protein) 5'-D(GPGPCPAPCPTPGPAPTPCPGPGPG)-3' (nucleic acid) 5'-D(TPTPAPCPGPCPCPTPCPGPAPTPCPAPGPTPGPCPC)-3' (nucleic acid)
Unique Ligands	CA, DCP

Explore in 3D

3QZ8	Download File View File

TT-4 ternary complex of Dpo4

Pata, J.D., Wu, Y., Wilson, R.C.

(2011) J Bacteriol 193: 2630-2636

Released	2011-04-06
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DNA polymerase IV (protein) 5'-D(GPGPCPAPCPTPGPAPTPCPAPGPG)-3' (nucleic acid) 5'-D(TPTPAPCPGPCPCPTPTPGPAPTPCPAPGPTPGPCPC)-3' (nucleic acid)
Unique Ligands	CA, DCP

Explore in 3D

4F4W	Download File View File

Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #1

Pata, J.D., Wilson, R.C.

(2013) Structure 21: 20-31

Released	2013-01-02
Method	X-RAY DIFFRACTION 1.898 Å
Organisms	Saccharolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPCPAPCPTPGPAPTPCPGPGPC)-3') (nucleic acid) DNA (5'-D(TPTPAPCPGPGPCPCPGPAPTPCPAPGPTPGPCP*C)-3') (nucleic acid)
Unique Ligands	CA, DCP

Explore in 3D

4F4X	Download File View File

Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #2

Pata, J.D., Wilson, R.C.

(2013) Structure 21: 20-31

Released	2013-01-02
Method	X-RAY DIFFRACTION 2.049 Å
Organisms	Saccharolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPCPAPCPTPGPAPTPCPGPGPGPC)-3') (nucleic acid) DNA (5'-D(TPTPAPCPGPCPCPCPTPGPAPTPCPAPGPTPGPCP*C)-3') (nucleic acid)
Unique Ligands	CA, DCP

Explore in 3D

4F4Y	Download File View File

Y-family DNA polymerase chimera Dbh-Dpo4-Dbh

Pata, J.D., Wilson, R.C.

(2013) Structure 21: 20-31

Released	2013-01-02
Method	X-RAY DIFFRACTION 2.338 Å
Organisms	Saccharolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639 synthetic construct
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPCPAPCPTPGPAPTPCPGPGPGPCPCPC)-3') (nucleic acid) DNA (5'-D(TPTPAPCPGPCPCPCPTPGPAPTPCPAPGPTPGPCP*C)-3') (nucleic acid)
Unique Ligands	CA, DCP

Explore in 3D

4F4Z	Download File View File

Y-family DNA polymerase chimera Dpo4-Dpo4-Dbh

Pata, J.D., Wilson, R.C.

(2013) Structure 21: 20-31

Released	2013-01-02
Method	X-RAY DIFFRACTION 2.305 Å
Organisms	Saccharolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639 synthetic construct
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(APGPGPGPGPGPAPAPGPCPCPG)-3') (nucleic acid) DNA (5'-D(TPTPCPCPGPCPCPCPGPGPCPTPTPCPCPCPCPCP*T)-3') (nucleic acid)
Unique Ligands	CA

Explore in 3D

4F50	Download File View File

Y-family DNA polymerase chimera Dbh-Dbh-Dpo4

Pata, J.D., Wilson, R.C.

(2013) Structure 21: 20-31

Released	2013-01-02
Method	X-RAY DIFFRACTION 2.215 Å
Organisms	Saccharolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(CPCPGPCPCPTGPGPCPTPTPCPCPC)-3') (nucleic acid) DNA (5'-D(GPGPGPAPAPGPCPCPGPGP*C)-3') (nucleic acid)
Unique Ligands	CA

Explore in 3D

4HYK	Download File View File

Dbh Ternary Complex (substrates partially disordered)

Pata, J.D., Wilson, R.C.

(2013) Structure 21: 20-31

Released	2013-01-02
Method	X-RAY DIFFRACTION 2.802 Å
Organisms	Sulfolobus acidocaldarius DSM 639 synthetic construct
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPGPAPAPGPCPCPGPG)-3') (nucleic acid) DNA (5'-D(TPTPCPCPGPCPCPCPCPGPGPCPTPTPCPCP*C)-3') (nucleic acid)

Explore in 3D

4NLG	Download File View File

Y-family DNA polymerase chimera Dbh-Dpo4(243-245)-Dbh

Mukherjee, P., Wilson, R.C., Pata, J.D.

(2014) J Biol Chem 289: 6323-6331

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	DNA polymerase IV (protein) 5'-D(GPGPCPAPCPTPGPAPTPCPGPGPG)-3' (nucleic acid) 5'-D(TPTPAPCPGPCPCPCPTPGPAPTPCPAPGPTPGPCPC)-3' (nucleic acid)
Unique Ligands	CA, DCP

1 to 14 of 14 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification