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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = 970

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Search Summary

This query matches 32 Structures.

Refinements

Structure Determination Methodology

experimental (32)

Scientific Name of Source Organism

	Ovis aries (9)
	Acidithiobacillus ferrooxidans ATCC 23270 (7)
	Sus scrofa (5)
	Escherichia coli BL21(DE3) (4)
	Shigella flexneri (2)
	Yarrowia lipolytica (2)
	Aquifex aeolicus (1)
	Escherichia coli str. K-12 substr. MC4100 (1)
	Thermus thermophilus HB8 (1)

Taxonomy

	Bacteria (16)
	Eukaryota (16)

Experimental Method

	ELECTRON MICROSCOPY (23)
	X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (32)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (9)
	2.5 - 3.0 (14)
	3.0 - 3.5 (6)
	3.5 - 4.0 (2)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (7)
	2015 - 2019 (2)
	2020 - 2024 (22)

Enzyme Classification Name

	Translocases (24)
	Oxidoreductases (17)
	Hydrolases (2)

Membrane Protein Annotation

	PDBTM (23)
	mpstruc (20)
	OPM (19)
	MemProtMD (9)

Symmetry Type

	Asymmetric (24)
	Cyclic (8)
	Dihedral (1)

SCOP Classification

	All alpha proteins (8)
	Alpha and beta proteins (a/b) (8)
	Alpha and beta proteins (a+b) (7)
	Membrane and cell surface proteins and peptides (7)

AllSelected

1 to 25 of 32 Structures

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3HYW	Download File View File

3-D X-Ray structure of the sulfide:quinone oxidoreductase of the hyperthermophilic bacterium Aquifex aeolicus in complex with decylubiquinone

Marcia, M., Ermler, U., Peng, G.H., Michel, H.

(2009) Proc Natl Acad Sci U S A 106: 9625-9630

Released	2009-07-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aquifex aeolicus
Macromolecule	Sulfide-quinone reductase (protein)
Unique Ligands	DCQ, FAD, H2S, LMT, PS9, SO4

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3SX6	Download File View File

Crystal structure of sulfide:quinone oxidoreductase Cys356Ala variant from Acidithiobacillus ferrooxidans complexed with decylubiquinone

Cherney, M.M., Zhang, Y., James, M.N.G., Weiner, J.H.

(2012) J Struct Biol 178: 319-328

Released	2012-05-16
Method	X-RAY DIFFRACTION 1.7955 Å
Organisms	Acidithiobacillus ferrooxidans ATCC 23270
Macromolecule	Sulfide-quinone reductase (protein)
Unique Ligands	DCQ, FAD, H2S, LMT, SO4

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3SXI	Download File View File

Crystal structure of sulfide:quinone oxidoreductase Cys128Ala variant from Acidithiobacillus ferrooxidans complexed with decylubiquinone

Cherney, M.M., Zhang, Y., James, M.N.G., Weiner, J.H.

(2012) J Struct Biol 178: 319-328

Released	2012-05-16
Method	X-RAY DIFFRACTION 2.1792 Å
Organisms	Acidithiobacillus ferrooxidans ATCC 23270
Macromolecule	Sulfide-quinone reductase, putative (protein)
Unique Ligands	DCQ, FAD, H2S, LMT, SO4

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3SZC	Download File View File

Crystal structure of sulfide:quinone oxidoreductase from Acidithiobacillus ferrooxidans in complex with gold (I) cyanide

Cherney, M.M., Zhang, Y., James, M.N.G., Weiner, J.H.

(2012) J Struct Biol 178: 319-328

Released	2012-05-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Acidithiobacillus ferrooxidans ATCC 23270
Macromolecule	Sulfide-quinone reductase, putative (protein)
Unique Ligands	AU, DCQ, FAD, H2S, SO4

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3SZF	Download File View File

Crystal structure of sulfide:quinone oxidoreductase H198A variant from Acidithiobacillus ferrooxidans in complex with bound trisulfide and decylubiquinone

Cherney, M.M., Zhang, Y., James, M.N.G., Weiner, J.H.

(2012) J Struct Biol 178: 319-328

Released	2012-05-16
Method	X-RAY DIFFRACTION 2.0994 Å
Organisms	Acidithiobacillus ferrooxidans ATCC 23270
Macromolecule	Sulfide-quinone reductase, putative (protein)
Unique Ligands	DCQ, FAD, H2S, LMT, S3H, SO4

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3SZW	Download File View File

Crystal structure of sulfide:quinone oxidoreductase Cys128Ser variant from Acidithiobacillus ferrooxidans in complex with decylubiquinone

Cherney, M.M., Zhang, Y., James, M.N.G., Weiner, J.H.

(2012) J Struct Biol 178: 319-328

Released	2012-05-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Acidithiobacillus ferrooxidans ATCC 23270
Macromolecule	Sulfide-quinone reductase, putative (protein)
Unique Ligands	DCQ, FAD, H2S, LMT, SO4

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3T0K	Download File View File

Crystal structure of sulfide:quinone oxidoreductase from Acidithiobacillus ferrooxidans with bound trisulfide and decylubiquinone

Cherney, M.M., Zhang, Y., James, M.N.G., Weiner, J.H.

(2012) J Struct Biol 178: 319-328

Released	2012-05-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acidithiobacillus ferrooxidans ATCC 23270
Macromolecule	Sulfide-quinone reductase, putative (protein)
Unique Ligands	DCQ, FAD, H2S, S3H, SO4

Explore in 3D

3T31	Download File View File

Crystal structure of sulfide:quinone oxidoreductase from Acidithiobacillus ferrooxidans in complex with decylubiquinone

Cherney, M.M., Zhang, Y., Solomonson, M., Weiner, J.H., James, M.N.

(2010) J Mol Biol 398: 292-305

Released	2011-08-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Acidithiobacillus ferrooxidans ATCC 23270
Macromolecule	Sulfide-quinone reductase (protein)
Unique Ligands	DCQ, FAD, H2S, LMT

Explore in 3D

6I0D	Download File View File

Respiratory complex I from Thermus thermophilus with bound Decyl-Ubiquinone

Gutierrez-Fernandez, J., Minhas, G.S., Sazanov, L.A.

(2020) Nat Commun 11: 4135-4135

Released	2020-09-02
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 16
Unique Ligands	DCQ, FES, FMN, SF4

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6S8H	Download File View File

Cryo-EM structure of LptB2FG in complex with LPS

Tang, X.D., Chang, S.H., Luo, Q.H., Zhang, Z.Y., Qiao, W., Xu, C.H., Zhang, C.B., Niu, Y., Yang, W.X., Wang, T., Zhang, Z.B., Zhu, X.F., Dong, C.J., Zhang, X., Dong, H.H.

(2019) Nat Commun 10: 4175-4175

Released	2019-09-25
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Shigella flexneri
Macromolecule	Inner membrane protein yjgQ (protein) Lipopolysaccharide ABC transporter, ATP-binding protein LptB (protein) Lipopolysaccharide export system permease protein LptF (protein)
Unique Ligands	DCQ, JSG, LMN, LMT

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6S8N	Download File View File

Cryo-EM structure of LptB2FGC in complex with lipopolysaccharide

Tang, X.D., Chang, S.H., Luo, Q.H., Zhang, Z.Y., Qiao, W., Xu, C.H., Zhang, C.B., Niu, Y., Yang, W.X., Wang, T., Zhang, Z.B., Zhu, X.F., Dong, C.J., Zhang, X., Dong, H.H.

(2019) Nat Commun 10: 4175-4175

Released	2019-09-25
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Shigella flexneri
Macromolecule	Inner membrane protein yjgQ (protein) Lipopolysaccharide ABC transporter, ATP-binding protein LptB (protein) Lipopolysaccharide export system permease protein LptF (protein) Lipopolysaccharide export system protein LptC (protein)
Unique Ligands	DCQ, L0W, LMN, LMT

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6ZKA	Download File View File

Membrane domain of open complex I during turnover

Kampjut, D., Sazanov, L.A.

(2020) Science 370:

Released	2020-10-07
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Ovis aries
Macromolecule	Unique protein chains: 29
Unique Ligands	3PE, AMP, CDL, DCQ, MYR, PC1, ZMP

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6ZKC	Download File View File

Complex I during turnover, closed

Kampjut, D., Sazanov, L.A.

(2020) Science 370:

Released	2020-10-07
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Ovis aries
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, AMP, CDL, DCQ, FES, FMN, K, MYR, NAI, NDP, PC1, SF4, ZMP, ZN

Explore in 3D

6ZKD	Download File View File

Complex I during turnover, open1

Kampjut, D., Sazanov, L.A.

(2020) Science 370:

Released	2020-10-07
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Ovis aries
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, AMP, CDL, DCQ, FES, FMN, K, MYR, NAI, NDP, PC1, SF4, ZMP, ZN

Explore in 3D

6ZKE	Download File View File

Complex I during turnover, open2

Kampjut, D., Sazanov, L.A.

(2020) Science 370:

Released	2020-10-07
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Ovis aries
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, AMP, CDL, DCQ, FES, FMN, K, MYR, NAI, NDP, PC1, SF4, ZMP, ZN

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6ZKF	Download File View File

Complex I during turnover, open3

Kampjut, D., Sazanov, L.A.

(2020) Science 370:

Released	2020-10-14
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Ovis aries
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, AMP, CDL, DCQ, FES, FMN, K, MYR, NAI, NDP, PC1, SF4, ZMP, ZN

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6ZKH	Download File View File

Complex I with NADH, open1

Kampjut, D., Sazanov, L.A.

(2020) Science 370:

Released	2020-10-07
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Ovis aries
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, AMP, CDL, DCQ, FES, FMN, K, MYR, NAI, NDP, PC1, SF4, ZMP, ZN

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6ZKI	Download File View File

Complex I with NADH, open2

Kampjut, D., Sazanov, L.A.

(2020) Science 370:

Released	2020-10-07
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Ovis aries
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, AMP, CDL, DCQ, FES, FMN, K, MYR, NAI, NDP, PC1, SF4, ZMP, ZN

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6ZKJ	Download File View File

Complex I with NADH, open3

Kampjut, D., Sazanov, L.A.

(2020) Science 370:

Released	2020-10-07
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Ovis aries
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, AMP, CDL, DCQ, FES, FMN, K, MYR, NAI, NDP, PC1, SF4, ZMP, ZN

Explore in 3D

7P63	Download File View File

Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 6, Closed state

Kravchuk, V., Kampjut, D., Sazanov, L.

(2022) Nature 609: 808-814

Released	2022-09-21
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Unique protein chains: 13
Unique Ligands	3PE, CA, DCQ, FES, FMN, LFA, NAI, SF4

Explore in 3D

7P64	Download File View File

Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 6, Open state

Kravchuk, V., Kampjut, D., Sazanov, L.

(2022) Nature 609: 808-814

Released	2022-09-21
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Unique protein chains: 13
Unique Ligands	3PE, CA, DCQ, FES, FMN, LFA, NAI, SF4

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7P7J	Download File View File

Complex I from E. coli, DDM/LMNG-purified, with DQ, Open state

Kravchuk, V., Kampjut, D., Sazanov, L.

(2022) Nature 609: 808-814

Released	2022-09-21
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Unique protein chains: 13
Unique Ligands	3PE, CA, DCQ, FES, FMN, LFA, SF4

Explore in 3D

7V2H	Download File View File

Active state complex I from DQ-NADH dataset

Gu, J.K., Yang, M.J.

(2022) Nat Struct Mol Biol 29: 172-182

Released	2022-03-02
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 44
Unique Ligands	8Q1, ADP, CDL, DCQ, FES, FMN, MG, NAI, NDP, PEE, PLX, SF4, UQ, ZN

Explore in 3D

7VB7	Download File View File

Matrix arm of active state CI from DQ-NADH dataset

Gu, J.K., Yang, M.J.

(2022) Nat Struct Mol Biol 29: 172-182

Released	2022-04-06
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 18
Unique Ligands	8Q1, CDL, DCQ, FES, FMN, MG, NAI, NDP, PEE, PLX, SF4, UQ, ZN

Explore in 3D

7W2R	Download File View File

Active state CI from DQ-NADH dataset, Subclass 1

Gu, J.K., Yang, M.J.

(2022) Nat Struct Mol Biol 29: 172-182

Released	2023-02-01
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 44
Unique Ligands	8Q1, ADP, CDL, DCQ, FES, FMN, MG, NAI, NDP, PEE, PLX, SF4, UQ, ZN

1 to 25 of 32 Structures

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