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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 494 Structures.

Refinements

Structure Determination Methodology

experimental (494)

Scientific Name of Source Organism

	Homo sapiens (197)
	Severe acute respiratory syndrome coronavirus 2 (91)
	synthetic construct (40)
	Escherichia coli (24)
	Mycobacterium tuberculosis (18)
	Sus scrofa (10)
	Mus musculus (9)
	Nostoc sp. 'Peltigera membranacea cyanobiont' 210A (9)
	Rattus norvegicus (9)
	Escherichia coli K-12 (8)

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Taxonomy

	Eukaryota (248)
	Bacteria (128)
	Riboviria (110)
	other sequences (40)
	Archaea (6)
	Duplodnaviria (2)
	Varidnaviria (2)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (394)
	ELECTRON MICROSCOPY (66)
	SOLUTION NMR (32)
	SOLID-STATE NMR (2)

Polymer Entity Type

	Protein (488)
	DNA (29)
	RNA (14)

Refinement Resolution (Å)

	1.0 - 1.5 (100)
	1.5 - 2.0 (78)
	2.0 - 2.5 (127)
	2.5 - 3.0 (88)
	3.0 - 3.5 (45)
	3.5 - 4.0 (16)
	4.0 - 4.5 (3)
	> 4.5 (3)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (38)
	2005 - 2009 (56)
	2010 - 2014 (56)
	2015 - 2019 (125)
	2020 - 2024 (216)

Enzyme Classification Name

	Hydrolases (145)
	Transferases (59)
	Ligases (12)
	Isomerases (6)
	Translocases (5)
	Lyases (4)
	Oxidoreductases (4)

Membrane Protein Annotation

	PDBTM (36)
	mpstruc (30)
	MemProtMD (27)
	OPM (20)

Symmetry Type

	Asymmetric (307)
	Cyclic (163)
	Dihedral (22)
	Octahedral (3)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a+b) (63)
	All alpha proteins (36)
	Alpha and beta proteins (a/b) (55)
	Artifacts (45)
	All beta proteins (12)
	Coiled coil proteins (2)
	Small proteins (3)
	Multi-domain proteins (alpha and beta) (1)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 494 Structures

Page 1 of 20

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1A8Y	Download File View File

CRYSTAL STRUCTURE OF CALSEQUESTRIN FROM RABBIT SKELETAL MUSCLE SARCOPLASMIC RETICULUM AT 2.4 A RESOLUTION

Wang, S., Trumble, W.R., Liao, H., Wesson, C.R., Dunker, A.K., Kang, C.

(1998) Nat Struct Biol 5: 476-483

Released	1999-03-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Oryctolagus cuniculus
Macromolecule	CALSEQUESTRIN (protein)

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1BQJ	Download File View File

CRYSTAL STRUCTURE OF D(ACCCT)

Weil, J., Min, T., Yang, C., Wang, S., Sutherland, C., Sinha, N., Kang, C.H.

(1999) Acta Crystallogr D Biol Crystallogr 55: 422-429

Released	1999-03-18
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	DNA (5'-D(APCPCPCP*T)-3') (nucleic acid)

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1CN0	Download File View File

CRYSTAL STRUCTURE OF D(ACCCT)

Weil, J., Min, T., Cheng, Y., Wang, S., Sutherland, C., Sinha, N., Kang, C.

(1999) Acta Crystallogr D Biol Crystallogr 55: 422-429

Released	2000-05-24
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	DNA (5'-D(APCPCPCP*T)-3') (nucleic acid)

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1D1P	Download File View File

CRYSTAL STRUCTURE OF A YEAST LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE (LTP1)

Wang, S., Tabernero, L., Zhang, M., Harms, E., Van Etten, R.L., Stauffacher, C.V.

(2000) Biochemistry 39: 1903-1914

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	TYROSINE PHOSPHATASE (protein)
Unique Ligands	EPE

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1D1Q	Download File View File

CRYSTAL STRUCTURE OF A YEAST LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE (LTP1) COMPLEXED WITH THE SUBSTRATE PNPP

Wang, S., Tabernero, L., Zhang, M., Harms, E., Van Etten, R.L., Staufacher, C.V.

(2000) Biochemistry 39: 1903-1914

Released	2000-03-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	TYROSINE PHOSPHATASE (E.C.3.1.3.48) (protein)
Unique Ligands	4NP, GOL, PO4

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1D2A	Download File View File

CRYSTAL STRUCTURE OF A YEAST LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE (LTP1) COMPLEXED WITH THE ACTIVATOR ADENINE

Wang, S., Stauffacher, C.V., Van Etten, R.L.

(2000) Biochemistry 39: 1234-1242

Released	2000-03-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	TYROSINE PHOSPHATASE (protein)
Unique Ligands	ADE, CL, PO4

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1GYJ	Download File View File

The Crystal Structure of YdcE, a 4-Oxalocrotonate Tautomerase Homologue from Escherichia coli, Confirms the Structural Basis for Oligomer Diversity

Almrud, J., Kern, A., Wang, S., Czerwinski, R., Johnson, W., Murzin, A., Hackert, M., Whitman, C.

(2002) Biochemistry 41: 12010

Released	2002-10-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	HYPOTHETICAL PROTEIN YDCE (protein)

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1GYX	Download File View File

The Crystal Structure of YdcE, a 4-Oxalocrotonate Tautomerase Homologue from Escherichia coli, Confirms the Structural Basis for Oligomer Diversity

Almrud, J., Kern, A., Wang, S., Czerwinski, R., Johnson, W., Murzin, A., Hackert, M., Whitman, C.

(2002) Biochemistry 41: 12010-12024

Released	2002-10-10
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Escherichia coli K-12
Macromolecule	HYPOTHETICAL PROTEIN YDCE (protein)
Unique Ligands	BEZ, EPE

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1GYY	Download File View File

The Crystal Structure of YdcE, a 4-Oxalocrotonate Tautomerase Homologue from Escherichia coli, Confirms the Structural Basis for Oligomer Diversity

Almrud, J., Kern, A., Wang, S., Czerwinski, R., Johnson, W., Murzin, A., Hackert, M., Whitman, C.

(2002) Biochemistry 41: 12010

Released	2002-10-10
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Escherichia coli
Macromolecule	HYPOTHETICAL PROTEIN YDCE (protein)
Unique Ligands	FHC

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1JPX	Download File View File

Mutation that destabilize the gp41 core: determinants for stabilizing the SIV/CPmac envelope glycoprotein complex. Wild type.

Liu, J., Wang, S., LaBranche, C.C., Hoxie, J.A., Lu, M.

(2002) J Biol Chem 277: 12891-12900

Released	2002-04-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Simian immunodeficiency virus
Macromolecule	gp41 envelope protein (protein)

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1JQ0	Download File View File

Mutation that destabilize the gp41 core: determinants for stabilizing the SIV/CPmac envelope glycoprotein complex. Mutant structure.

Liu, J., Wang, S., LaBranche, C.C., Hoxie, J.A., Lu, M.

(2002) J Biol Chem 277: 12891-12900

Released	2002-04-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Simian immunodeficiency virus
Macromolecule	gp41 envelope protein (protein)

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1JRK	Download File View File

Crystal Structure of a Nudix Protein from Pyrobaculum aerophilum Reveals a Dimer with Intertwined Beta Sheets

Wang, S., Mura, C., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2002) Acta Crystallogr D Biol Crystallogr 58: 571-578

Released	2002-04-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	Nudix homolog (protein)
Unique Ligands	MPD

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1K26	Download File View File

Structure of a Nudix Protein from Pyrobaculum aerophilum Solved by the Single Wavelength Anomolous Scattering Method

Wang, S., Mura, C., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2002) Acta Crystallogr D Biol Crystallogr 58: 571-578

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	NUDIX HOMOLOG (protein)
Unique Ligands	ACY, GOL, IR3, NI, SO4

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1K2E	Download File View File

crystal structure of a nudix protein from Pyrobaculum aerophilum

Wang, S., Mura, C., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2002) Acta Crystallogr D Biol Crystallogr 58: 571-578

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	NUDIX HOMOLOG (protein)
Unique Ligands	ACY, GOL, NI, SO4

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1L0O	Download File View File

Crystal Structure of the Bacillus stearothermophilus Anti-Sigma Factor SpoIIAB with the Sporulation Sigma Factor SigmaF

Campbell, E.A., Masuda, S., Sun, J.L., Muzzin, O., Olson, C.A., Wang, S., Darst, S.A.

(2002) Cell 108: 795-807

Released	2002-04-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Anti-sigma F factor (protein) sigma factor (protein)
Unique Ligands	ADP, MG

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1MOP	Download File View File

Crystal Structure of a Pantothenate Synthetase from M. tuberculosis

Wang, S., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2003) Protein Sci 12: 1097-1108

Released	2003-03-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	pantothenate synthetase (protein)
Unique Ligands	EOH, GOL, SO4

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1N2B	Download File View File

Crystal Structure of a Pantothenate Synthetase from M. tuberculosis in complex with AMPCPP and pantoate, higher occupancy of pantoate and lower occupancy of AMPCPP in subunit A

Wang, S., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2003) Protein Sci 12: 1097-1108

Released	2003-04-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Pantothenate synthetase (protein)
Unique Ligands	APC, EOH, GOL, MG, PAF, SO4

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1N2E	Download File View File

Crystal Structure of a Pantothenate Synthetase from M. tuberculosis in complex with AMPCPP and pantoate

Wang, S., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2003) Protein Sci 12: 1097-1108

Released	2003-04-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	pantothenate synthetase (protein)
Unique Ligands	APC, EOH, GOL, MG, PAF, SO4

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1N2G	Download File View File

Crystal Structure of a Pantothenate Synthetase from M. tuberculosis in complex with AMPCPP

Wang, S., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2003) Protein Sci 12: 1097-1108

Released	2003-04-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Pantothenate synthetase (protein)
Unique Ligands	APC, EOH, GOL, MG, SO4

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1N2H	Download File View File

Crystal Structure of a Pantothenate Synthetase from M. tuberculosis in complex with a reaction intermediate, pantoyl adenylate

Wang, S., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2003) Protein Sci 12: 1097-1108

Released	2003-04-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	pantothenate synthetase (protein)
Unique Ligands	EOH, GOL, MN, PAJ, SO4

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1N2I	Download File View File

Crystal Structure of Pantothenate Synthetase from M. tuberculosis in complex with a reaction intermediate, pantoyl adenylate, different occupancies of pantoyl adenylate

Wang, S., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2003) Protein Sci 12: 1097-1108

Released	2003-04-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	pantothenate synthetase (protein)
Unique Ligands	EOH, GOL, PAJ, SO4

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1N2J	Download File View File

Crystal Structure of a Pantothenate Synthetase from M. tuberculosis in complex with pantoate

Wang, S., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2003) Protein Sci 12: 1097-1108

Released	2003-04-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	pantothenate synthetase (protein)
Unique Ligands	BAL, EOH, GOL, PAF, SO4

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1N2O	Download File View File

Crystal Structure of Pantothenate Synthetase from M. tuberculosis, low occupancy of beta-alanine at the pantoate binding sites

Wang, S., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2003) Protein Sci 12: 1097-1108

Released	2003-04-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	pantothenate synthetase (protein)
Unique Ligands	BAL, SO4

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1OR7	Download File View File

Crystal Structure of Escherichia coli sigmaE with the Cytoplasmic Domain of its Anti-sigma RseA

Campbell, E.A., Tupy, J.L., Gruber, T.M., Wang, S., Sharp, M.M., Gross, C.A., Darst, S.A.

(2003) Mol Cell 11: 1067-1078

Released	2003-04-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	RNA polymerase sigma-E factor (protein) Sigma-E factor negative regulatory protein (protein)