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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 210 Structures.

Refinements

Structure Determination Methodology

experimental (210)

Scientific Name of Source Organism

	Homo sapiens (81)
	Severe acute respiratory syndrome coronavirus 2 (21)
	Obelia longissima (13)
	synthetic construct (11)
	Haemophilus influenzae (8)
	Rattus norvegicus (4)
	Saccharomyces cerevisiae S288C (4)
	Staphylococcaceae bacterium (4)
	Staphylococcus aureus subsp. aureus NCTC 8325 (4)
	Acinetobacter baumannii (3)

More...

Taxonomy

	Eukaryota (115)
	Bacteria (49)
	Riboviria (31)
	other sequences (11)
	Archaea (3)
	Duplodnaviria (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (178)
	ELECTRON MICROSCOPY (22)
	SOLUTION NMR (10)

Polymer Entity Type

	Protein (209)
	RNA (5)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (15)
	1.5 - 2.0 (75)
	2.0 - 2.5 (63)
	2.5 - 3.0 (21)
	3.0 - 3.5 (8)
	3.5 - 4.0 (8)
	4.0 - 4.5 (3)
	> 4.5 (7)

Release Date

	2000 - 2004 (14)
	2005 - 2009 (78)
	2010 - 2014 (38)
	2015 - 2019 (19)
	2020 - 2024 (60)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (35)
	Transferases (26)
	Translocases (9)
	Lyases (12)
	Oxidoreductases (7)
	Isomerases (1)
	Ligases (1)

Membrane Protein Annotation

	PDBTM (10)
	MemProtMD (5)
	OPM (5)
	mpstruc (3)

Symmetry Type

	Asymmetric (134)
	Cyclic (65)
	Dihedral (17)
	Helical (2)
	Octahedral (1)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (50)
	Artifacts (44)
	Alpha and beta proteins (a/b) (15)
	All alpha proteins (25)
	Alpha and beta proteins (a+b) (17)
	Multi-domain proteins (alpha and beta) (2)
	Small proteins (1)

AllSelected

1 to 25 of 210 Structures

Page 1 of 9

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1EL4	Download File View File

STRUCTURE OF THE CALCIUM-REGULATED PHOTOPROTEIN OBELIN DETERMINED BY SULFUR SAS

Liu, Z.J., Vysotski, E.S., Rose, J., Lee, J., Wang, B.C.

(2000) Protein Sci 9: 2085-2093

Released	2001-03-13
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Obelia longissima
Macromolecule	OBELIN (protein)
Unique Ligands	CL, CTZ

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1JF0	Download File View File

The Crystal Structure of Obelin from Obelia geniculata at 1.82 A Resolution

Deng, L., Vysotski, E., Liu, Z.-J., Markova, S., Lee, J., Rose, J., Wang, B.-C.

To be published

Released	2001-07-11
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Obelia longissima
Macromolecule	Obelin (protein)
Unique Ligands	CZH

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1JF2	Download File View File

Crystal Structure of W92F obelin mutant from Obelia longissima at 1.72 Angstrom resolution

Liu, Z.-J., Vysotski, E.S., Deng, L., Markova, S.V., Lee, J., Rose, J.P., Wang, B.-C.

(2003) Biochemistry 42: 6013-6024

Released	2001-07-11
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Obelia longissima
Macromolecule	obelin (protein)
Unique Ligands	CZH

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1JPY	Download File View File

Crystal structure of IL-17F

Hymowitz, S.G., Filvaroff, E.H., Yin, J., Lee, J., Cai, L., Risser, P., Maruoka, M., Mao, W., Foster, J., Kelley, R., Pan, G., Gurney, A.L., de Vos, A.M., Starovasnik, M.A.

(2001) EMBO J 20: 5332-5341

Released	2001-09-28
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	interleukin 17F (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	NAG, NDG

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1LX8	Download File View File

Regulation of directionality in bacteriophage lambda site-specific recombination: structure of the Xis protein

Sam, M.D., Papagiannis, C., Connolly, K.M., Corselli, L., Iwahara, J., Lee, J., Phillips, M., Wojciak, J.M., Johnson, R.C., Clubb, R.T.

(2002) J Mol Biol 324: 791-805

Released	2003-06-10
Method	SOLUTION NMR
Organisms	Lambdavirus lambda
Macromolecule	Excisionase (protein)

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1N6A	Download File View File

Structure of SET7/9

Kwon, T.W., Chang, J.H., Kwak, E., Lee, C.W., Joachimiak, A., Kim, Y.C., Lee, J., Cho, Y.

(2003) EMBO J 22: 292-303

Released	2003-02-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	SET domain-containing protein 7 (protein)
Unique Ligands	SAM

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1QV0	Download File View File

Atomic resolution structure of obelin from Obelia longissima

Liu, Z.J., Vysotski, E.S., Deng, L., Lee, J., Rose, J., Wang, B.C.

(2003) Biochem Biophys Res Commun 311: 433-439

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Obelia longissima
Macromolecule	Obelin (protein)
Unique Ligands	CO, CZH, GOL, K

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1QV1	Download File View File

Atomic resolution structure of obelin from Obelia longissima

Liu, Z.J., Vysotski, E.S., Deng, L., Lee, J., Rose, J., Wang, B.C.

(2003) Biochem Biophys Res Commun 311: 433-439

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Obelia longissima
Macromolecule	Obelin (protein)
Unique Ligands	CA, CO, CZH, GOL, K

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1S36	Download File View File

Crystal structure of a Ca2+-discharged photoprotein: Implications for the mechanisms of the calcium trigger and the bioluminescence

Deng, L., Markova, S.V., Vysotski, E.S., Liu, Z.-J., Lee, J., Rose, J., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

(2004) J Biol Chem 279: 33647-33652

Released	2004-10-05
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Obelia longissima
Macromolecule	Obelin (protein)
Unique Ligands	CEI, CL, GOL, NA

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1SL7	Download File View File

Crystal structure of calcium-loaded apo-obelin from Obelia longissima

Deng, L., Markova, S.V., Vysotski, E.S., Liu, Z.J., Lee, J., Rose, J., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

(2005) Protein Sci 14: 663-675

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Obelia longissima
Macromolecule	Obelin (protein)
Unique Ligands	CA

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1SL8	Download File View File

Calcium-loaded apo-aequorin from Aequorea victoria

Deng, L., Markova, S.V., Vysotski, E.S., Liu, Z.J., Lee, J., Rose, J., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

(2005) Protein Sci 14: 663-675

Released	2004-12-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aequorea victoria
Macromolecule	Aequorin 1 (protein)
Unique Ligands	CA

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1SL9	Download File View File

Obelin from Obelia longissima

Deng, L., Markova, S., Vysotski, E., Liu, Z.-J., Lee, J., Rose, J., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2005-07-19
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	Obelia longissima
Macromolecule	Obelin (protein)
Unique Ligands	CZH

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1WOG	Download File View File

Crystal Structure of Agmatinase Reveals Structural Conservation and Inhibition Mechanism of the Ureohydrolase Superfamily

Ahn, H.J., Kim, K.H., Lee, J., Ha, J.-Y., Lee, H.H., Kim, D., Yoon, H.-J., Kwon, A.-R., Suh, S.W.

(2004) J Biol Chem 279: 50505-50513

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Deinococcus radiodurans
Macromolecule	agmatinase (protein)
Unique Ligands	16D, MN

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1WOH	Download File View File

Crystal Structure of Agmatinase Reveals Structural Conservation and Inhibition Mechanism of the Ureohydrolase Superfamily

Ahn, H.J., Kim, K.H., Lee, J., Ha, J.-Y., Lee, H.H., Kim, D., Yoon, H.-J., Kwon, A.-R., Suh, S.W.

(2004) J Biol Chem 279: 50505-50513

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Deinococcus radiodurans
Macromolecule	agmatinase (protein)

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1WOI	Download File View File

Crystal Structure of Agmatinase Reveals Structural Conservation and Inhibition Mechanism of the Ureohydrolase Superfamily

Ahn, H.J., Kim, K.H., Lee, J., Ha, J.-Y., Lee, H.H., Kim, D., Yoon, H.-J., Kwon, A.-R., Suh, S.W.

(2004) J Biol Chem 279: 50505-50513

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Deinococcus radiodurans
Macromolecule	agmatinase (protein)
Unique Ligands	MN

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1YTO	Download File View File

Crystal Structure of Gly19 deletion Mutant of Human Acidic Fibroblast Growth Factor

Lee, J., Blaber, M.

(2006) Proteins 62: 686-697

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Heparin-binding growth factor 1 (protein)
Unique Ligands	FMT, SO4

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1Z2V	Download File View File

Crystal Structure of Glu60 deletion Mutant of Human Acidic Fibroblast Growth Factor

Lee, J., Blaber, M.

(2006) Proteins 62: 686-697

Released	2006-02-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Heparin-binding growth factor 1 (protein)
Unique Ligands	SO4

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1Z4S	Download File View File

Crystal Structure of Gly19 and Glu60 deletion mutant of Human Acidic Fibroblast Growth Factor

Lee, J., Blaber, M.

(2005) Proteins 62: 686-697

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Heparin-binding growth factor 1 (protein)
Unique Ligands	SO4

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1ZYR	Download File View File

Structure of Thermus thermophilus RNA polymerase holoenzyme in complex with the antibiotic streptolydigin

Tuske, S., Sarafianos, S.G., Wang, X., Hudson, B., Sineva, E., Mukhopadhyay, J., Birktoft, J.J., Leroy, O., Ismail, S., Clark, A.D., Dharia, C., Napoli, A., Laptenko, O., Lee, J., Borukhov, S., Ebright, R.H., Arnold, E.

(2005) Cell 122: 541-552

Released	2005-09-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermus thermophilus
Macromolecule	DNA-directed RNA polymerase alpha chain (protein) DNA-directed RNA polymerase beta chain (protein) DNA-directed RNA polymerase omega chain (protein) DNA-directed RNA polymerase sigma chain (protein) DNA-directed RNA polymerase subunit beta' chain (protein)
Unique Ligands	MG, STD, ZN

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2A8C	Download File View File

Haemophilus influenzae beta-carbonic anhydrase

Cronk, J.D., Rowlett, R.S., Zhang, K.Y.J., Tu, C., Endrizzi, J.A., Lee, J., Gareiss, P.C., Preiss, J.R.

(2006) Biochemistry 45: 4351-4361

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Haemophilus influenzae
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	SO4, ZN

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2A8D	Download File View File

Haemophilus influenzae beta-carbonic anhydrase complexed with bicarbonate

Cronk, J.D., Rowlett, R.S., Zhang, K.Y.J., Tu, C., Endrizzi, J.A., Lee, J., Gareiss, P.C., Preiss, J.R.

(2006) Biochemistry 45: 4351-4361

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Haemophilus influenzae
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	BCT, SO4, ZN

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2AQZ	Download File View File

Crystal structure of FGF-1, S17T/N18T/G19 deletion mutant

Lee, J., Blaber, M.

(2006) Proteins 62: 686-697

Released	2006-02-07
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Heparin-binding growth factor 1 (protein)
Unique Ligands	SO4

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2AZR	Download File View File

Crystal structure of PTP1B with Bicyclic Thiophene inhibitor

Moretto, A.F., Kirincich, S.J., Xu, W.X., Smith, M.J., Wan, Z.K., Wilson, D.P., Follows, B.C., Binnun, E., Joseph-McCarthy, D., Foreman, K., Erbe, D.V., Zhang, Y.L., Tam, S.K., Tam, S.Y., Lee, J.

(2006) Bioorg Med Chem 14: 2162-2177

Released	2005-12-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase, non-receptor type 1 (protein)
Unique Ligands	982

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2B02	Download File View File

Crystal Structure of ARNT PAS-B Domain

Lee, J., Botuyan, M.V., Nomine, Y., Ohh, M., Thompson, J.R., Mer, G.

To be published

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Aryl hydrocarbon receptor nuclear translocator (protein)

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2B07	Download File View File

Crystal structure of PTP1B with Tricyclic Thiophene inhibitor.

Moretto, A.F., Kirincich, S.J., Xu, W.X., Smith, M.J., Wan, Z.K., Wilson, D.P., Follows, B.C., Binnun, E., Joseph-McCarthy, D., Foreman, K., Erbe, D.V., Zhang, Y.L., Tam, S.K., Tam, S.Y., Lee, J.

(2006) Bioorg Med Chem 14: 2162-2177

Released	2005-12-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase, non-receptor type 1 (protein)
Unique Ligands	598