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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = NEN

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Saccharomyces cerevisiae (5)
	Homo sapiens (4)
	Severe acute respiratory syndrome coronavirus 2 (2)
	Sus scrofa (1)
	Tequatrovirus T4 (1)
	Yersinia pestis (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (10)
	Riboviria (2)
	Bacteria (1)
	Duplodnaviria (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (7)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (1)
	2010 - 2014 (3)
	2015 - 2019 (2)
	2020 - 2024 (5)

Enzyme Classification Name

	Hydrolases (7)
	Oxidoreductases (5)
	Lyases (1)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (8)
	Cyclic (5)
	Dihedral (2)

SCOP Classification

	All beta proteins (4)
	Artifacts (4)
	All alpha proteins (4)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 14 of 14 Structures

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1CR5	Download File View File

N-TERMINAL DOMAIN OF SEC18P

Babor, S.M., Fass, D.

(1999) Proc Natl Acad Sci U S A 96: 14759-14764

Released	1999-12-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	SEC18P (RESIDUES 22 - 210) (protein)
Unique Ligands	NEN

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1RP4	Download File View File

Structure of Ero1p, Source of Disulfide Bonds for Oxidative Protein Folding in the Cell

Gross, E., Kastner, D.B., Kaiser, C.A., Fass, D.

(2004) Cell 117: 601-610

Released	2004-06-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Hypothetical 65.0 kDa protein in COX14-COS3 intergenic region precursor (protein)
Unique Ligands	CD, FAD, NEN

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1RQ1	Download File View File

Structure of Ero1p, Source of Disulfide Bonds for Oxidative Protein Folding in the Cell

Gross, E., Kastner, D.B., Kaiser, C.A., Fass, D.

(2004) Cell 117: 601-610

Released	2004-06-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Hypothetical 65.0 kDa protein in COX14-COS3 intergenic region precursor (protein)
Unique Ligands	CD, FAD, NEN

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2Z6B	Download File View File

Crystal Structure Analysis of (gp27-gp5)3 conjugated with Fe(III) protoporphyrin

Koshiyama, T., Yokoi, N., Ueno, T., Kanamaru, S., Nagano, S., Shiro, Y., Arisaka, F., Watanabe, Y.

(2008) Small 4: 50-54

Released	2008-04-15
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Tequatrovirus T4
Macromolecule	Baseplate structural protein Gp27 (protein) Tail-associated lysozyme (protein)
Unique Ligands	NEN

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3M31	Download File View File

Structure of the C150A/C295A mutant of S. cerevisiae Ero1p

Heldman, N., Fass, D.

(2010) Protein Sci 19: 1863-1876

Released	2010-11-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Endoplasmic oxidoreductin-1 (protein)
Unique Ligands	CD, FAD, NEN

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3NVJ	Download File View File

Crystal structure of the C143A/C166A mutant of Ero1p

Fass, D., Vonshak, O.

(2010) Protein Sci 19: 1863-1876

Released	2010-11-03
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Endoplasmic oxidoreductin-1 (protein)
Unique Ligands	CD, FAD, NEN

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4H46	Download File View File

Crystal Structure of AMP complexes of NEM modified Porcine Liver Fructose-1,6-bisphosphatase

Gao, Y., Honzatko, R.B.

To be published

Released	2013-09-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Sus scrofa
Macromolecule	Fructose-1,6-bisphosphatase 1 (protein)
Unique Ligands	AMP, F6P, MG, NEN, PO4

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4US0	Download File View File

The crystal structure of H-Ras and SOS in complex with ligands

Winter, J.J.G., Anderson, M., Blades, K., Brassington, C., Breeze, A.L., Chresta, C., Embrey, K., Fairley, G., Faulder, P., Finlay, M.R.V., Kettle, J.G., Nowak, T., Overman, R., Patel, S.J., Perkins, P., Spadola, L., Tart, J., Tucker, J., Wrigley, G.

(2015) J Med Chem 58: 2265

Released	2015-03-04
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Homo sapiens
Macromolecule	GTPase HRas (protein) Son of sevenless homolog 1 (protein)
Unique Ligands	NEN

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5LF6	Download File View File

Human 20S proteasome complex with Z-LLY-ketoaldehyde at 2.1 Angstrom

Schrader, J., Henneberg, F., Mata, R., Tittmann, K., Schneider, T.R., Stark, H., Bourenkov, G., Chari, A.

(2016) Science 353: 594-598

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 15
Unique Ligands	1PE, CL, K, MG, NEN

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6XB1	Download File View File

Room temperature X-ray crystallography reveals catalytic cysteine in the SARS-CoV-2 3CL Mpro is highly reactive: Insights for enzyme mechanism and drug design

Kneller, D.W., Kovalevsky, A., Coates, L.

(2020) IUCrJ 7:

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	NEN

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6XB2	Download File View File

Room temperature X-ray crystallography reveals catalytic cysteine in the SARS-CoV-2 3CL Mpro is highly reactive: Insights for enzyme mechanism and drug design

Kneller, D.W., Kovalevsky, A., Coates, L.

(2020) IUCrJ 7:

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	DMS, NEN

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7SU8	Download File View File

DIHYDRONEOPTERIN ALDOLASE (DHNA) FROM YERSINIA PESTIS with alkylated Cys50 CO-CRYSTALLIZED with 7,8-dihydroneopterin

Bourne, C.R.

To be published

Released	2022-12-28
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Yersinia pestis
Macromolecule	7,8-dihydroneopterin aldolase (protein)
Unique Ligands	MPD, NEN, PH2, TRS

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8BZL	Download File View File

Human 20S Proteasome in complex with peptide activator peptide BLM42

Henneberg, F., Chari, A., Jankowska, E., Witkowska, J.

(2025) ACS Chem Biol

Released	2023-12-27
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	1PE, CL, K, MG, NEN

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8E8V	Download File View File

Structure of the short LOR domain of human AASS bound to N-ethylsuccinimide

Khamrui, S., Lazarus, M.B.

(2022) Open Biol 12: 220179-220179

Released	2022-10-05
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	Alpha-aminoadipic semialdehyde synthase, mitochondrial (protein)
Unique Ligands	NEN