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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Schizosaccharomyces pombe 972h- (3)
	Acanthamoeba polyphaga mimivirus (2)
	Bacillus phage phi3T (2)
	Spbetavirus SPbeta (2)
	synthetic construct (2)
	Homo sapiens (1)
	Mycobacterium tuberculosis H37Rv (1)
	Severe acute respiratory syndrome coronavirus 2 (1)

Taxonomy

	Duplodnaviria (4)
	Eukaryota (4)
	Varidnaviria (2)
	other sequences (2)
	Bacteria (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (10)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (11)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (5)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (7)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (3)
	Transferases (1)

Symmetry Type

	Cyclic (8)
	Asymmetric (4)

AllSelected

1 to 11 of 11 Structures

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3SP4	Download File View File

Crystal structure of aprataxin ortholog Hnt3 from Schizosaccharomyces pombe

Gong, Y., Zhu, D., Ding, J., Dou, C., Ren, X., Jiang, T., Wang, D.

(2011) Nat Struct Mol Biol 18: 1297-1299

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Aprataxin-like protein (protein)
Unique Ligands	SO4, ZN

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3SPD	Download File View File

Crystal structure of aprataxin ortholog Hnt3 in complex with DNA

Gong, Y., Zhu, D., Ding, J., Dou, C., Ren, X., Jiang, T., Wang, D.

(2011) Nat Struct Mol Biol 18: 1297-1299

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.912 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Aprataxin-like protein (protein) DNA (5'-D(GPTPCPAPCPTPAPTPCPGPGPAPAPTPGPAPG)-3') (nucleic acid) DNA (5'-D(TPAPTPTPCPCPGPAPTPAPGPTPGPAPC)-3') (nucleic acid)
Unique Ligands	SO4, ZN

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3SPL	Download File View File

Crystal structure of aprataxin ortholog Hnt3 in complex with DNA and AMP

Gong, Y., Zhu, D., Ding, J., Dou, C., Ren, X., Jiang, T., Wang, D.

(2011) Nat Struct Mol Biol 18: 1297-1299

Released	2011-10-12
Method	X-RAY DIFFRACTION 2.101 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Aprataxin-like protein (protein) DNA (5'-D(GPTPCPAPCPTPAPTPCPGPGPAPAPTPGPAPG)-3') (nucleic acid) DNA (5'-D(TPAPTPTPCPCPGPAPTPAPGPTPGPAPC)-3') (nucleic acid)
Unique Ligands	AMP, SO4, ZN

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5XUO	Download File View File

Pks13 AT domain fragment from Mycobacterium tuberculosis

Yu, M.J., Gu, Y.J., Dou, C., Cheng, W.

(2018) PeerJ 6: e4728-e4728

Released	2018-05-02
Method	X-RAY DIFFRACTION 2.586 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Polyketide synthase Pks13 (protein)

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5YET	Download File View File

Structure of R354_WT

Dou, C., Yu, M.J., Gu, Y.J., Cheng, W.

(2018) iScience 3: 1-10

Released	2018-06-20
Method	X-RAY DIFFRACTION 2.806 Å
Organisms	Acanthamoeba polyphaga mimivirus
Macromolecule	Uncharacterized protein R354 (protein)

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5YEU	Download File View File

Structural and mechanistic analyses reveal a unique Cas4-like protein in the mimivirus virophage resistance element system

Dou, C., Yu, M.J., Gu, Y.J., Cheng, W.

(2018) iScience 3: 1-10

Released	2018-07-25
Method	X-RAY DIFFRACTION 3.001 Å
Organisms	Acanthamoeba polyphaga mimivirus
Macromolecule	Uncharacterized protein R354 (protein)
Unique Ligands	MG

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5ZVV	Download File View File

Structure of SeMet-phAimR

Cheng, W., Dou, C.

(2018) Nat Microbiol 3: 1285-1294

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus phage phi3T
Macromolecule	AimR transcriptional regulator (protein)
Unique Ligands	GOL

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5ZVW	Download File View File

Structure of phAimR-Ligand

Cheng, W., Dou, C.

(2018) Nat Microbiol 3: 1285-1294

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.292 Å
Organisms	Bacillus phage phi3T synthetic construct
Macromolecule	AimR transcriptional regulator (protein) SER-ALA-ILE-ARG-GLY-ALA (protein)

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5ZW5	Download File View File

Structure of SeMet-spAimR

Cheng, W., Dou, C.

(2018) Nat Microbiol 3: 1285-1294

Released	2018-08-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Spbetavirus SPbeta
Macromolecule	AimR transcriptional regulator (protein)

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5ZW6	Download File View File

Structure of spAimR

Cheng, W., Dou, C.

(2018) Nat Microbiol 3: 1285-1294

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Spbetavirus SPbeta synthetic construct
Macromolecule	AimR transcriptional regulator (protein) GLY-MET-PRO-ARG-GLY-ALA (protein)

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7E23	Download File View File

SARS-CoV-2 spike in complex with the CA521 neutralizing antibody Fab (focused refinement on Fab-RBD)

Liu, C., Song, D., Dou, C.

(2021) Commun Biol 4: 500-500

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	CA521 Heavy Chain (protein) CA521 Light Chain (protein) Spike protein S1 (protein)
Unique Ligands	NAG

1 to 11 of 11 Structures

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