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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Common Name (Entity Source Organism) = "Clostridium difficile"

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Search Summary

This query matches 9 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Clostridioides difficile 630 (6)
	Clostridioides difficile (2)
	Clostridioides difficile R20291 (1)
	Escherichia coli (1)

Taxonomy

Bacteria (9)

Experimental Method

	X-RAY DIFFRACTION (8)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (3)
	2.0 - 2.5 (2)
	2.5 - 3.0 (2)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (8)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (8)
	Cyclic (1)

SCOP Classification

	All beta proteins (2)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 9 of 9 Polymer Entities

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3TDO: Entity 1	Download File View File

Crystal structure of HSC at pH 9.0

Czyzewski, B.K., Wang, D.-N.

(2012) Nature 483: 494-497

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.197 Å
Chain IDs	A, B, C, D, E
Organism	Clostridioides difficile 630
Macromolecule	Putative formate/nitrite transporter

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4OGM: Entity 1	Download File View File

MBP-fusion protein of PilA1 residues 26-159

Piepenbrink, K.H., Sundberg, E.J.

(2015) Structure 23: 385-396

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.234 Å
Chain ID	A
Organism	Clostridioides difficile Escherichia coli
Macromolecule	Maltose ABC transporter periplasmic protein, pilin protein chimera

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5VQM: Entity 1	Download File View File

Clostridium difficile TcdB-GTD bound to PA41 Fab

Kroh, H.K., Spiller, B.W., Lacy, D.B.

(2018) J Biological Chem 293: 941-952

Released	2017-12-06
Method	X-RAY DIFFRACTION 2.79 Å
Chain IDs	A, D [auth B]
Organism	Clostridioides difficile R20291
Macromolecule	Toxin B

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6C00: Entity 1	Download File View File

Solution structure of translation initiation factor 1 from Clostridium difficile

Zhang, Y., Aguilar, F.

(2019) Biomol NMR Assign 13: 91-95

Released	2019-01-16
Method	SOLUTION NMR
Chain ID	A
Organism	Clostridioides difficile
Macromolecule	Translation initiation factor IF-1

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6GKW: Entity 1	Download File View File

Crystal structure of the R-type bacteriocin sheath protein CD1363 from Clostridium difficile in the pre-assembled state

Schwemmlein, N., Pippel, J., Gazdag, E.M., Blankenfeldt, W.

(2018) Front Microbiol 9: 1750-1750

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.9 Å
Chain ID	A
Organism	Clostridioides difficile 630
Macromolecule	Putative phage XkdK-like protein

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6GKX: Entity 1	Download File View File

Crystal structure of the R-type bacteriocin tube protein CD1364 from Clostridium difficile in the pre-assembled state

Schwemmlein, N., Pippel, J., Gazdag, E.M., Blankenfeldt, W.

(2018) Front Microbiol 9: 1750-1750

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	A
Organism	Clostridioides difficile 630
Macromolecule	Putative phage XkdM-like protein

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6HNI: Entity 1	Download File View File

The ligand-bound, closed structure of CD0873, a substrate binding protein with adhesive properties from Clostridium difficile.

Bradshaw, W.J., Kovacs-Simon, A., Harmer, N.J., Michell, S.L., Acharya, K.R.

(2019) J Biological Chem 294: 15850-15861

Released	2019-08-28
Method	X-RAY DIFFRACTION 1.35 Å
Chain ID	A
Organism	Clostridioides difficile 630
Macromolecule	ABC-type transport system, sugar-family extracellular solute-binding protein

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6HNJ: Entity 1	Download File View File

The ligand-bound, open structure of CD0873, a substrate binding protein with adhesive properties from Clostridium difficile.

Bradshaw, W.J., Kovacs-Simon, A., Harmer, N.J., Michell, S.L., Acharya, K.R.

(2019) J Biological Chem 294: 15850-15861

Released	2019-08-28
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Clostridioides difficile 630
Macromolecule	ABC-type transport system, sugar-family extracellular solute-binding protein

Explore in 3D

6HNK: Entity 1	Download File View File

The ligand-free, open structure of CD0873, a substrate binding protein with adhesive properties from Clostridium difficile.

Bradshaw, W.J., Kovacs-Simon, A., Harmer, N.J., Michell, S.L., Acharya, K.R.

(2019) J Biological Chem 294: 15850-15861

Released	2019-08-28
Method	X-RAY DIFFRACTION 2.5 Å
Chain ID	A
Organism	Clostridioides difficile 630
Macromolecule	ABC-type transport system, sugar-family extracellular solute-binding protein

1 to 9 of 9 Polymer Entities

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