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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Scientific Name of the Source Organism = "Methanosarcina mazei"

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Search Summary

This query matches 84 Polymer Entities.

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Structure Determination Methodology

experimental (84)

Scientific Name of Source Organism

	Methanosarcina mazei (84)
	Homo sapiens (2)
	synthetic construct (2)
	Magnetospirillum sp. XM-1 (1)
	Spizellomyces punctatus (1)

Taxonomy

	Archaea (84)
	Eukaryota (3)
	other sequences (2)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (75)
	ELECTRON MICROSCOPY (5)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (82)
	DNA (1)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (30)
	2.0 - 2.5 (21)
	2.5 - 3.0 (14)
	3.0 - 3.5 (8)
	4.0 - 4.5 (2)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (25)
	2010 - 2014 (25)
	2015 - 2019 (7)
	2020 - 2024 (23)
	2025 - 2029 (3)

Enzyme Classification Name

	Ligases (34)
	Transferases (13)
	Hydrolases (7)
	Isomerases (3)
	Lyases (3)
	Translocases (1)

Membrane Protein Annotation

	OPM (2)
	PDBTM (2)
	mpstruc (2)

Symmetry Type

	Cyclic (58)
	Asymmetric (32)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	Alpha and beta proteins (a/b) (7)
	All alpha proteins (4)
	All beta proteins (4)
	Artifacts (1)

AllSelected

1 to 25 of 84 Polymer Entities

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1XN9: Entity 1	Download File View File

Solution Structure of Methanosarcina mazei Protein RPS24E: The Northeast Structural Genomics Consortium Target MaR11

Liu, G., Xiao, R., Parish, D., Ma, L., Sukumaran, D., Acton, T., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2004-12-14
Method	SOLUTION NMR
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	30S ribosomal protein S24e

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1Z2Z: Entity 1	Download File View File

Crystal Structure of the Putative tRNA pseudouridine synthase D (TruD) from Methanosarcina mazei, Northeast Structural Genomics Target MaR1

Forouhar, F., Yong, W., Ciano, M., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.6 Å
Chain IDs	A, B
Organism	Methanosarcina mazei
Macromolecule	Probable tRNA pseudouridine synthase D

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1ZQ7: Entity 1	Download File View File

X-Ray Crystal Structure of Protein Q8PZK8 from Methanosarcina mazei. Northeast Structural Genomics Consortium Target MaR9.

Kuzin, A.P., Abashidze, M., Vorobiev, S.M., Yong, W., Xiao, R., Ma, L.-C., Acton, T., Montelione, G.T., Tong, L., Hunt, J., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-05-31
Method	X-RAY DIFFRACTION 2.11 Å
Chain IDs	A, B, C, D
Organism	Methanosarcina mazei
Macromolecule	Hypothetical protein MM0484

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2E3C: Entity 1	Download File View File

Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase

Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) J Mol Biol 378: 634-652

Released	2007-12-11
Method	X-RAY DIFFRACTION 2.65 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase

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2KBN: Entity 1	Download File View File

Solution NMR structure of the OB domain (residues 67-166) of MM0293 from Methanosarcina mazei. Northeast Structural Genomics Consortium target MaR214a.

Ramelot, T.A., Ding, K., Magliqui, M., Jiang, M., Ciccosanti, C., Xiao, R., Lui, J., Everett, J.K., Swapna, G., Acton, T.B., Rost, B., Montelione, G.T., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2009-07-07
Method	SOLUTION NMR
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Conserved protein

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2KEN: Entity 1	Download File View File

Solution NMR structure of the OB domain (residues 67-166) of MM0293 from Methanosarcina mazei. Northeast Structural Genomics Consortium target MaR214a.

To be published

Released	2009-02-10
Method	SOLUTION NMR
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Conserved protein

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2KZW: Entity 1	Download File View File

Solution NMR Structure of Q8PSA4 from Methanosarcina mazei, Northeast Structural Genomics Consortium Target MaR143A

Mills, J.L., Eletsky, A., Lee, H., Lee, D., Ciccosanti, C., Hamilton, K., Acton, T.B., Xiao, R., Everett, J.K., Prestegard, J.H., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2010-08-25
Method	SOLUTION NMR
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Uncharacterized protein

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2NR4: Entity 1	Download File View File

Crystal structure of FMN-bound protein MM1853 from Methanosarcina mazei, Pfam DUF447

Bonanno, J.B., Gilmore, J., Bain, K.T., Lau, C., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-11-07
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, B
Organism	Methanosarcina mazei
Macromolecule	Conserved hypothetical protein

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2Q2E: Entity 1	Download File View File

Crystal structure of the topoisomerase VI holoenzyme from Methanosarcina mazei

Corbett, K.D., Benedetti, P., Berger, J.M.

(2007) Nat Struct Mol Biol 14: 611-619

Released	2007-07-10
Method	X-RAY DIFFRACTION 4 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Type II DNA topoisomerase VI subunit A

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2Q2E: Entity 2	Download File View File

Crystal structure of the topoisomerase VI holoenzyme from Methanosarcina mazei

Corbett, K.D., Benedetti, P., Berger, J.M.

(2007) Nat Struct Mol Biol 14: 611-619

Released	2007-07-10
Method	X-RAY DIFFRACTION 4 Å
Chain ID	B
Organism	Methanosarcina mazei
Macromolecule	Type 2 DNA topoisomerase 6 subunit B

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2Q7E: Entity 1	Download File View File

The structure of pyrrolysyl-tRNA synthetase bound to an ATP analogue

Kavran, J.M., Steitz, T.A.

(2007) Proc Natl Acad Sci U S A 104: 11268-11273

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase

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2Q7G: Entity 1	Download File View File

Pyrrolysine tRNA Synthetase bound to a pyrrolysine analogue (cyc) and ATP

Kavran, J.M., Steitz, T.A.

(2007) Proc Natl Acad Sci U S A 104: 11268-11273

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.9 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase

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2Q7H: Entity 1	Download File View File

Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate

Kavran, J.M., Steitz, T.A.

(2007) Proc Natl Acad Sci U S A 104: 11268-11273

Released	2007-07-24
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase

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2RKW: Entity 1	Download File View File

Intermediate position of ATP on its trail to the binding pocket inside the subunit B mutant R416W of the energy converter A1Ao ATP synthase

Kumar, A., Manimekalai, M.S.S., Balakrishna, A.M., Hunke, C., Gruber, G.

(2009) Proteins 75: 807-819

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.81 Å
Chain IDs	A, B
Organism	Methanosarcina mazei
Macromolecule	V-type ATP synthase beta chain

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2XR1: Entity 1	Download File View File

DIMERIC ARCHAEAL CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR WITH N-TERMINAL KH DOMAINS (KH-CPSF) FROM METHANOSARCINA MAZEI

Mir-Montazeri, B., Ammelburg, M., Forouzan, D., Lupas, A.N., Hartmann, M.D.

(2011) J Struct Biol 173: 191

Released	2010-10-06
Method	X-RAY DIFFRACTION 2.59 Å
Chain IDs	A, B
Organism	Methanosarcina mazei
Macromolecule	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100 KD SUBUNIT

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2ZCE: Entity 1	Download File View File

Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with pyrrolysine and an ATP analogue

Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) J Mol Biol 378: 634-652

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase

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2ZIM: Entity 1	Download File View File

Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate

Steitz, T.A., Kavran, J.M.

(2007) Proc Natl Acad Sci U S A 104: 11268-11273

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase

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2ZIN: Entity 1	Download File View File

Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with BocLys and an ATP analogue

Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Chem Biol 15: 1187-1197

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.79 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase

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2ZIO: Entity 1	Download File View File

Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with AlocLys-AMP and PNP

Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Chem Biol 15: 1187-1197

Released	2008-12-02
Method	X-RAY DIFFRACTION 2.06 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase

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3B2Q: Entity 1	Download File View File

Intermediate position of ATP on its trail to the binding pocket inside the subunit B mutant R416W of the energy converter A1Ao ATP synthase

Kumar, A., Manimekalai, M.S.S., Balakrishna, A.M., Hunke, C., Gruber, G.

(2009) Proteins 75: 807-819

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Methanosarcina mazei
Macromolecule	V-type ATP synthase beta chain

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3DSR: Entity 1	Download File View File

ADP in transition binding site in the subunit B of the energy converter A1Ao ATP synthase

Kumar, A., Manimekalai, S.M.S., Balakrishna, A.M., Gruber, G.

(2008) Acta Crystallogr D Biol Crystallogr 64: 1110-1115

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.7 Å
Chain IDs	A, B
Organism	Methanosarcina mazei
Macromolecule	V-type ATP synthase beta chain

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3DTN: Entity 1	Download File View File

Crystal structure of putative Methyltransferase-MM_2633 from Methanosarcina mazei .

Ramagopal, U.A., Toro, R., Meyer, A.J., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.09 Å
Chain IDs	A, B
Organism	Methanosarcina mazei
Macromolecule	Putative Methyltransferase MM_2633

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3EIU: Entity 1	Download File View File

A second transient position of ATP on its trail to the nucleotide-binding site of subunit B of the motor protein A1Ao ATP synthase

Manimekalai, S.M.S., Kumar, A., Balakrishna, A.M., Gruber, G.

(2009) J Struct Biol 166: 38-45

Released	2009-02-10
Method	X-RAY DIFFRACTION 3.43 Å
Chain IDs	A, B
Organism	Methanosarcina mazei
Macromolecule	V-type ATP synthase beta chain

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3GRN: Entity 1	Download File View File

CRYSTAL STRUCTURE OF MUTT PROTEIN FROM Methanosarcina mazei Go1

Patskovsky, Y., Romero, R., Gilmore, M., Do, J., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2009-04-07
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, B
Organism	Methanosarcina mazei
Macromolecule	MutT related protein

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3HZ4: Entity 1	Download File View File

Crystal Structure of Thioredoxin from Methanosarcina mazei

Syed Ibrahim, B., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	B, A
Organism	Methanosarcina mazei
Macromolecule	Thioredoxin

1 to 25 of 84 Polymer Entities

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