RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "DIR3"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Homo sapiens (9)
	Lama glama (4)
	Bos taurus (3)
	synthetic construct (3)
	Escherichia phage EcSzw-2 (2)
	Influenza A virus (A/Victoria/3/1975(H3N2)) (2)
	Rattus norvegicus (2)

Taxonomy

	Eukaryota (9)
	other sequences (3)
	Duplodnaviria (2)
	Riboviria (2)

Experimental Method

ELECTRON MICROSCOPY (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	2.5 - 3.0 (2)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)
	4.0 - 4.5 (4)
	> 4.5 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (8)

Enzyme Classification Name

Hydrolases (6)

Membrane Protein Annotation

	mpstruc (8)
	OPM (6)
	PDBTM (6)
	MemProtMD (4)

Symmetry Type

Asymmetric (9)

SCOP Classification

	All beta proteins (1)
	All alpha proteins (1)
	Artifacts (1)

AllSelected

1 to 9 of 9 Structures

Page 1 of 1

Sort by

Explore in 3D

6NI2	Download File View File

Stabilized beta-arrestin 1-V2T subcomplex of a GPCR-G protein-beta-arrestin mega-complex

Nguyen, A.H., Thomsen, A.R.B., Cahill, T.J., des Georges, A., Lefkowitz, R.J.

(2019) Nat Struct Mol Biol 26: 1123-1131

Released	2019-11-20
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Bos taurus Homo sapiens Lama glama synthetic construct
Macromolecule	Beta-arrestin-1 (protein) Fab30 Heavy Chain (protein) Fab30 Light Chain (protein) Nanobody 32 (protein) Vasopressin V2 receptor (protein)

Explore in 3D

6U1N	Download File View File

GPCR-Beta arrestin structure in lipid bilayer

Staus, D.P., Hu, H., Robertson, M.J., Kleinhenz, A.L.W., Wingler, L.M., Capel, W.D., Latorraca, N.R., Lefkowitz, R.J., Skiniotis, G.

(2020) Nature 579: 297-302

Released	2020-02-26
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Beta-arrestin-1 (protein) Fab30 heavy chain (protein) Fab30 light chain (protein) Muscarinic acetylcholine receptor M2, Vasopressin V2 receptor chimera (protein)
Unique Ligands	2CU

Explore in 3D

7BB6	Download File View File

AVP-V2R-Galphas-beta1-gamma2-Nb35 (L state)

Bous, J., Mouillac, B., Bron, P., Granier, S., Floquet, N., Leyrat, C.

(2021) Sci Adv 7:

Released	2021-06-02
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Unique protein chains: 6

Explore in 3D

7BB7	Download File View File

AVP-V2R-Galphas-beta1-gamma2-Nb35(T state)

Bous, J., Mouillac, B., Bron, P., Granier, S., Floquet, N., Leyrat, C.

(2021) Sci Adv 7:

Released	2021-06-02
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Unique protein chains: 6

Explore in 3D

7DW9	Download File View File

Cryo-EM structure of human V2 vasopressin receptor in complex with an Gs protein

Zhou, F., Jiang, Y.

(2021) Cell Res 31: 929-931

Released	2021-07-21
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus synthetic construct
Macromolecule	Unique protein chains: 7
Unique Ligands	CLR

Explore in 3D

7KH0	Download File View File

Cryo-EM structure of the human arginine vasopressin AVP-vasopressin receptor V2R-Gs signaling complex

Wang, L., Xu, J., Gao, S., Sun, D., Liu, H., Liu, Z., Du, Y., Zhang, C.

(2021) Cell Res 31: 932-934

Released	2021-05-26
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Unique protein chains: 7

Explore in 3D

7R0C	Download File View File

Structure of the AVP-V2R-arrestin2-ScFv30 complex

Bous, J., Fouillen, A., Trapani, S., Granier, S., Mouillac, B., Bron, P.

(2022) Sci Adv 8: eabo7761-eabo7761

Released	2022-09-14
Method	ELECTRON MICROSCOPY 4.73 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	AVP (protein) Arrestin2 (protein) ScFv30 (protein) Vasopressin V2 receptor (protein)

Explore in 3D

8JRU	Download File View File

Cryo-EM structure of the glucagon receptor bound to beta-arrestin 1 in ligand-free state

Chen, K., Zhang, C., Lin, S., Zhao, Q., Wu, B.

(2023) Nature 620: 904-910

Released	2023-08-16
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Bos taurus Escherichia phage EcSzw-2 Homo sapiens Influenza A virus (A/Victoria/3/1975(H3N2))
Macromolecule	Beta-arrestin 1 and single-chain fragment variable 30 (scFv30) (protein) HA signal peptide,HPC4 purification tag,Glucagon receptor,C-terminal tail of Vasopressin V2 receptor (protein) Nanobody 32 (protein)
Unique Ligands	PIO

Explore in 3D

8JRV	Download File View File

Cryo-EM structure of the glucagon receptor bound to glucagon and beta-arrestin 1

Chen, K., Zhang, C., Lin, S., Zhao, Q., Wu, B.

(2023) Nature 620: 904-910

Released	2023-08-16
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Escherichia phage EcSzw-2 Homo sapiens Influenza A virus (A/Victoria/3/1975(H3N2))
Macromolecule	Beta-arrestin 1 and single-chain fragment variable 30 (scFv30) (protein) Glucagon (protein) HA signal peptide,HPC4 purification tag,Glucagon receptor,C-terminal tail of Vasopressin V2 receptor (protein) Nanobody 32 (protein)
Unique Ligands	PIO

1 to 9 of 9 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification