Structure Determination Methodology Scientific Name of Source Organism More...
Refinement Resolution (Å) Enzyme Classification Name -- Tabular Report -- Entry IDs Create Custom Report Structure Sequence Ligand Oligosaccharide Structural Genomics Center Primary Citation Biological Details Sequence Clusters Binding Affinity Crystallization Data Collection Refinement Refinement Parameters Unit Cell NMR Representative Model NMR Spectrometer NMR Sample Conditions NMR Refinement NMR Ensemble NMR Software EM Structure
Yeh, H.J.C. , Sayer, J.M. , Liu, X. , Altieri, A.S. , Byrd, R.A. , Lakshman, M.K. , Yagi, H. , Schurter, E.J. , Gorenstein, D.G. , Jerina, D.M.
(1995) Biochemistry 34 : 13570-13581
Released 1995-12-07 Method SOLUTION NMR
Macromolecule Unique Ligands BAP
Volk, D.E. , Thiviyanathan, V. , Rice, J.S. , Luxon, B.A. , Shah, J.H. , Yagi, H. , Sayer, J.M. , Yeh, H.J.C. , Jerina, D.M. , Gorenstein, D.G.
(2003) Biochemistry 42 : 1410-1420
Released 2003-02-14 Method SOLUTION NMR
Macromolecule Unique Ligands TBC
Idaka, M. , Yagi, H. , Murayama, K. , Terada, T. , Kuramitsu, S. , Shirouzu, M. , Yokoyama, S. , RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Released 2004-11-17 Method X-RAY DIFFRACTION 2.1 Å
Organisms Macromolecule Unique Ligands CIT
Yagi, H. , Akutsu, H.
(2007) Proc Natl Acad Sci U S A 104 : 11233-11238
Released 2007-07-10 Method SOLUTION NMR
Organisms Macromolecule
Yagi, H. , Akutsu, H.
(2007) Proc Natl Acad Sci U S A 104 : 11233-11238
Released 2007-07-10 Method SOLUTION NMR
Organisms Macromolecule
Yagi, H. , Akutsu, H.
(2007) Proc Natl Acad Sci U S A 104 : 11233-11238
Released 2007-07-10 Method X-RAY DIFFRACTION 1.92 Å
Organisms Macromolecule Unique Ligands ATP
Bauer, J. , Ling, H. , Sayer, J.M. , Xing, G. , Yagi, H. , Jerina, D.M.
(2007) Proc Natl Acad Sci U S A 104 : 14905-14910
Released 2007-09-11 Method X-RAY DIFFRACTION 2.5 Å
Organisms Macromolecule Unique Ligands ATP , BAP , CA , EDO , GOL , PO4
Bauer, J. , Ling, H. , Sayer, J.M. , Xing, G. , Yagi, H. , Jerina, D.M.
(2007) Proc Natl Acad Sci U S A 104 : 14905-14910
Released 2007-09-11 Method X-RAY DIFFRACTION 2.25 Å
Organisms Macromolecule Unique Ligands BAP , CA , EDO , GOL , POP
Takeda, N. , Sugimori, N. , Torizawa, T. , Terauchi, T. , Ono, A.M. , Yagi, H. , Yamaguchi, Y. , Kato, K. , Ikeya, T. , Guntert, P. , Aceti, D.J. , Markley, J.L. , Kainosho, M. , Center for Eukaryotic Structural Genomics (CESG)
(2008) FEBS J 275 : 5873-5884
Released 2008-02-19 Method SOLUTION NMR
Organisms Macromolecule
Yagi, H. , Pilla, K. , Maleckis, A. , Graham, B. , Huber, T. , Otting, G.
(2013) Structure 21 : 883-890
Released 2013-07-10 Method SOLUTION NMR
Organisms Macromolecule
Wang, Y. , Kroth, H. , Yagi, H. , Sayer, J.M. , Kumar, S. , Jerina, D.M. , Stone, M.P.
(2008) Chem Res Toxicol 21 : 1348-1358
Released 2009-03-03 Method SOLUTION NMR
Macromolecule Unique Ligands BPJ
Yagi, H. , Konno, H. , Murakami-Fuse, T. , Oroguchi, H. , Akutsu, T. , Ikeguchi, M. , Hisabori, T.
(2010) Biochem J 425 : 85-94
Released 2010-01-12 Method SOLUTION NMR
Organisms Macromolecule
Yagi, H. , Konno, H. , Murakami-Fuse, T. , Oroguchi, H. , Akutsu, T. , Ikeguchi, M. , Hisabori, T.
(2010) Biochem J 425 : 85-94
Released 2010-01-12 Method SOLUTION NMR
Organisms Macromolecule
Mizushima, T. , Takemoto, E. , Yagi, H. , Shibata-Koyama, M. , Isoda, Y. , Iida, S. , Satoh, M. , Kato, K.
(2011) Genes Cells 16 : 1071-1080
Released 2011-08-03 Method X-RAY DIFFRACTION 2.2 Å
Organisms Macromolecule Unique branched monosaccharides BMA, FUC, GAL, MAN, NAG
Kumoi, K. , Satoh, T. , Hiromoto, T. , Mizushima, T. , Kamiya, Y. , Noda, M. , Uchiyama, S. , Murata, K. , Yagi, H. , Kato, K.
(2013) PLoS One 8 : e60294-e60294
Released 2013-04-03 Method X-RAY DIFFRACTION 2.2 Å
Organisms Macromolecule Unique Ligands AU
Satoh, T. , Saeki, Y. , Hiromoto, T. , Wang, Y.-H. , Uekusa, Y. , Yagi, H. , Yoshihara, H. , Yagi-Utsumi, M. , Mizushima, T. , Tanaka, K. , Kato, K.
(2014) Structure 22 : 731-743
Released 2014-03-26 Method X-RAY DIFFRACTION 1.65 Å
Organisms Macromolecule Unique Ligands CD , SO4
Satoh, T. , Saeki, Y. , Hiromoto, T. , Wang, Y.-H. , Uekusa, Y. , Yagi, H. , Yoshihara, H. , Yagi-Utsumi, M. , Mizushima, T. , Tanaka, K. , Kato, K.
(2014) Structure 22 : 731-743
Released 2014-03-26 Method X-RAY DIFFRACTION 2.6 Å
Organisms Macromolecule Unique Ligands ATP
Satoh, T. , Saeki, Y. , Hiromoto, T. , Wang, Y.-H. , Uekusa, Y. , Yagi, H. , Yoshihara, H. , Yagi-Utsumi, M. , Mizushima, T. , Tanaka, K. , Kato, K.
(2014) Structure 22 : 731-743
Released 2014-03-26 Method X-RAY DIFFRACTION 4 Å
Organisms Macromolecule Unique Ligands ATP
Isoda, Y. , Yagi, H. , Satoh, T. , Shibata-Koyama, M. , Masuda, K. , Satoh, M. , Kato, K. , Iida, S.
(2015) PLoS One 10 : e0140120-e0140120
Released 2015-10-14 Method X-RAY DIFFRACTION 3 Å
Organisms Macromolecule Unique Ligands CL Unique branched monosaccharides BMA, FUC, GAL, MAN, NAG
Sakae, Y. , Satoh, T. , Yagi, H. , Yanaka, S. , Yamaguchi, T. , Isoda, Y. , Iida, S. , Okamoto, Y. , Kato, K.
(2017) Sci Rep 7 : 13780-13780
Released 2017-11-01 Method X-RAY DIFFRACTION 2.4 Å
Organisms Macromolecule Unique Ligands CL Unique branched monosaccharides BMA, FUC, GAL, MAN, NAG
Sakae, Y. , Satoh, T. , Yagi, H. , Yanaka, S. , Yamaguchi, T. , Isoda, Y. , Iida, S. , Okamoto, Y. , Kato, K.
(2017) Sci Rep 7 : 13780-13780
Released 2017-11-01 Method X-RAY DIFFRACTION 2.5 Å
Organisms Macromolecule Unique Ligands CL , NAG Unique branched monosaccharides BMA, FUC, GAL, MAN, NAG
Taniguchi, Y. , Satoh, T. , Yagi, H. , Kato, K.
(2019) Int J Mol Sci 21 :
Released 2020-01-22 Method X-RAY DIFFRACTION 2.3 Å
Organisms Macromolecule Unique branched monosaccharides FUC, GAL, MAN, NAG
