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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "RH116"

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (8)
	Gallus gallus (4)
	synthetic construct (4)
	Simian virus 5 (strain W3) (1)
	Sus scrofa (1)

Taxonomy

	Eukaryota (13)
	other sequences (4)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (8)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (13)
	RNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	2.5 - 3.0 (4)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	4.0 - 4.5 (2)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (2)
	2015 - 2019 (4)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (13)
	Transferases (2)

Symmetry Type

	Asymmetric (11)
	Cyclic (1)
	Helical (1)

SCOP Classification

	All beta proteins (2)
	Artifacts (2)

AllSelected

1 to 13 of 13 Structures

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2RQB	Download File View File

Solution structure of MDA5 CTD

Takahasi, K., Kumeta, H., Tsuduki, N., Narita, R., Shigemoto, T., Hirai, R., Yoneyama, M., Horiuchi, M., Ogura, K., Fujita, T., Fuyuhiko, I.

(2009) J Biological Chem 284: 17465-17474

Released	2009-05-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Interferon-induced helicase C domain-containing protein 1 (protein)
Unique Ligands	ZN

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3B6E	Download File View File

Crystal structure of human DECH-box RNA Helicase MDA5 (Melanoma differentiation-associated protein 5), DECH-domain

Karlberg, T., Welin, M., Arrowsmith, C.H., Berglund, H., Busam, R.D., Collins, R., Dahlgren, L.G., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, I., Kallas, A., Kotenyova, T., Lehtio, L., Moche, M., Nilsson, M.E., Nordlund, P., Nyman, T., Persson, C., Sagemark, J., Svensson, L., Thorsell, A.G., Tresaugues, L., Van Den Berg, S., Weigelt, J., Holmberg-Schiavone, L., Structural Genomics Consortium (SGC)

To be published

Released	2007-11-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Interferon-induced helicase C domain-containing protein 1 (protein)
Unique Ligands	NA

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3GA3	Download File View File

Crystal structure of the C-terminal domain of human MDA5

Li, P.

To be published

Released	2009-02-24
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Interferon-induced helicase C domain-containing protein 1, MDA5 (protein)
Unique Ligands	ZN

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4GL2	Download File View File

Structural Basis for dsRNA duplex backbone recognition by MDA5

Wu, B., Hur, S.

(2013) Cell 152: 276-289

Released	2013-01-09
Method	X-RAY DIFFRACTION 3.557 Å
Organisms	Homo sapiens
Macromolecule	Interferon-induced helicase C domain-containing protein 1 (protein) RNA (5'-R(APUPCPCPGPCPGPGPCPCPCPU)-3') (nucleic acid) RNA (5'-R(PAPGPGPGPCPCPGPCPGPGPAPU)-3') (nucleic acid)
Unique Ligands	ANP, ZN

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4I1S	Download File View File

Melanoma differentiation associated protein-5 Helicase domain complex with inhibitor Non-structural protein V

Motz, C., Witte, G., Hopfner, K.P.

(2013) Science 339: 690-693

Released	2013-01-30
Method	X-RAY DIFFRACTION 2.293 Å
Organisms	Simian virus 5 (strain W3) Sus scrofa
Macromolecule	Melanoma differentiation associated protein-5 (protein) Non-structural protein V (protein)
Unique Ligands	ZN

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5JC3	Download File View File

Crystal structure of chicken MDA5 with 5'p 10-mer dsRNA and ADP-Mg2+ at 2.6 A resolution (monoclinic form, twinned).

Cusack, S., Uchikawa, E.

(2016) Mol Cell 62: 586-602

Released	2016-06-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Gallus gallus synthetic construct
Macromolecule	Melanoma differentiation associated protein-5 (protein) RNA (5'-R(PGPGPUPAPCPGPUPAPCPC)-3') (nucleic acid)
Unique Ligands	ADP, MG, ZN

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5JC7	Download File View File

Crystal structure of chicken MDA5 with 5'p 24-mer dsRNA and ADP-Mg2+ at 2.75 A resolution.

Cusack, S., Uchikawa, E.

(2016) Mol Cell 62: 586-602

Released	2016-06-01
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Gallus gallus synthetic construct
Macromolecule	Melanoma differentiation associated protein-5 (protein) RNA (5'-R(PGPGPAPCPGPUPCPAPUPGPCPGPCPAPUPGPAPCPGPUPCPCPCPC)-3') (nucleic acid) RNA (5'-R(PGPGPGPAPCPGPUPCPAPUPGPCPGPCPAPUPGPAPCPGPUPCPCPC)-3') (nucleic acid)
Unique Ligands	ADP, MG, ZN

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5JCF	Download File View File

Crystal structure of chicken MDA5 with 5'p 10-mer dsRNA and ADP-Mg2+ at 2.6 A resolution (orthorhombic form).

Cusack, S., Uchikawa, E.

(2016) Mol Cell 62: 586-602

Released	2016-06-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Gallus gallus synthetic construct
Macromolecule	Melanoma differentiation associated protein-5 (protein) RNA (5'-R(PAPGPGPUPAPCPGPUPAPCPC)-3') (nucleic acid) RNA (5'-R(PGPGPUPAPCPGPUPAPCP*C)-3') (nucleic acid)
Unique Ligands	ADP, MG, ZN

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5JCH	Download File View File

Crystal structure of chicken MDA5 with 5'p 10-mer dsRNA and ADP-Mg2+ at 2.95 A resolution (untwinned).

Cusack, S., Uchikawa, E.

(2016) Mol Cell 62: 586-602

Released	2016-06-01
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Gallus gallus synthetic construct
Macromolecule	Melanoma differentiation associated protein-5 (protein) RNA (5'-R(PGPGPUPAPCPGPUPAPCPC)-3') (nucleic acid)
Unique Ligands	ADP, MG, ZN

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7DNI	Download File View File

MDA5 CARDs-MAVS CARD polyUb complex

Song, B., Chen, Y., Luo, D.H., Zheng, J.

(2021) Immunity 54: 2218

Released	2021-10-13
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Interferon-induced helicase C domain-containing protein 1 (protein) Mitochondrial antiviral-signaling protein (protein) Ubiquitin (protein)

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7DNJ	Download File View File

K63-polyUb MDA5CARDs complex

Song, B., Chen, Y., Luo, D.H., Zheng, J.

(2021) Immunity 54: 2218

Released	2021-10-13
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	Interferon-induced helicase C domain-containing protein 1 (protein) Ubiquitin (protein)

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7JL0	Download File View File

Cryo-EM structure of MDA5-dsRNA in complex with TRIM65 PSpry domain (Monomer)

Kato, K., Ahmad, S., Hur, S.

(2021) Mol Cell 81: 599-613.e8

Released	2020-12-09
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens
Macromolecule	Interferon-induced helicase C domain-containing protein 1 (protein) Tripartite motif-containing protein 65 (protein) RNA (5'-R(PGPAPCPUPGPAPCPUPGPAPCPUPGPA)-3') (nucleic acid) RNA (5'-R(PUPCPAPGPUPCPAPGPUPCPAPGPUPC)-3') (nucleic acid)
Unique Ligands	ADP, ALF, MG, ZN

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7JL2	Download File View File

Cryo-EM structure of MDA5-dsRNA filament in complex with TRIM65 PSpry domain (Trimer)

Kato, K., Ahmad, S., Hur, S.

(2021) Mol Cell 81: 599-613.e8

Released	2020-12-09
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens
Macromolecule	Interferon-induced helicase C domain-containing protein 1 (protein) Tripartite motif-containing protein 65 (protein) RNA (44-MER) (nucleic acid)
Unique Ligands	ADP, ALF, MG, ZN

1 to 13 of 13 Structures

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