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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Calystegia sepium"

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Search Summary

This query matches 69 Structures.

Refinements

Structure Determination Methodology

experimental (69)

Scientific Name of Source Organism

	Streptomyces lavendulae (14)
	Chlamydomonas reinhardtii (7)
	Bacillus sp. MN-32 (6)
	synthetic construct (6)
	Homo sapiens (5)
	Pseudomonas sp. 101 (5)
	Scytalidium lignicola (4)
	Streptomyces verticillus (4)
	Alicyclobacillus sendaiensis (3)
	metagenome (3)

More...

Taxonomy

	Bacteria (47)
	Eukaryota (19)
	other sequences (6)
	unclassified sequences (3)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (61)
	ELECTRON MICROSCOPY (6)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (69)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (13)
	1.5 - 2.0 (18)
	2.0 - 2.5 (15)
	2.5 - 3.0 (16)
	3.0 - 3.5 (2)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (14)
	2005 - 2009 (6)
	2010 - 2014 (2)
	2015 - 2019 (11)
	2020 - 2024 (35)

Enzyme Classification Name

	Hydrolases (35)
	Transferases (4)
	Lyases (2)
	Isomerases (1)

Membrane Protein Annotation

	PDBTM (12)
	mpstruc (10)
	OPM (4)
	MemProtMD (2)

Symmetry Type

	Asymmetric (46)
	Cyclic (17)
	Dihedral (6)

SCOP Classification

	Alpha and beta proteins (a/b) (15)
	All beta proteins (6)
	All alpha proteins (4)
	Alpha and beta proteins (a+b) (3)
	Artifacts (2)

AllSelected

1 to 25 of 69 Structures

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1BHU	Download File View File

THE 3D STRUCTURE OF THE STREPTOMYCES METALLOPROTEINASE INHIBITOR, SMPI, ISOLATED FROM STREPTOMYCES NIGRESCENS TK-23, NMR, MINIMIZED AVERAGE STRUCTURE

Tate, S., Ohno, A., Seeram, S.S., Hiraga, K., Oda, K., Kainosho, M.

(1998) J Mol Biol 282: 421-433

Released	1999-01-06
Method	SOLUTION NMR
Organisms	Streptomyces nigrescens
Macromolecule	METALLOPROTEINASE INHIBITOR (protein)

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1F53	Download File View File

NMR STRUCTURE OF KILLER TOXIN-LIKE PROTEIN SKLP

Ohki, S., Kariya, E., Hiraga, K., Wakamiya, A., Isobe, T., Oda, K., Kainosho, M.

(2001) J Mol Biol 305: 109-120

Released	2000-12-27
Method	SOLUTION NMR
Organisms	Streptomyces sp.
Macromolecule	YEAST KILLER TOXIN-LIKE PROTEIN (protein)

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1GT9	Download File View File

High resolution crystal structure of a thermostable serine-carboxyl type proteinase, kumamolisin (kscp)

Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.

(2002) Structure 10: 865

Released	2002-06-13
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Bacillus subtilis
Macromolecule	KUMAMOLYSIN (protein)
Unique Ligands	CA, SO4

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1GTG	Download File View File

Crystal structure of the thermostable serine-carboxyl type proteinase, kumamolysin (kscp)

Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.

(2002) Structure 10: 865

Released	2002-06-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus sp. MN-32
Macromolecule	KUMAMOLYSIN (protein)
Unique Ligands	CA

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1GTJ	Download File View File

Crystal structure of the thermostable serine-carboxyl type proteinase, kumamolisin (KSCP) - complex with Ac-Ile-Ala-Phe-cho

Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.

(2002) Structure 10: 865

Released	2002-06-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Bacillus sp. MN-32 synthetic construct
Macromolecule	ALDEHYDE INHIBITOR (protein) KUMAMOLYSIN (protein)
Unique Ligands	CA, SO4

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1GTL	Download File View File

The thermostable serine-carboxyl type proteinase, kumamolisin (KSCP) - complex with Ac-Ile-Pro-Phe-cho

Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.

(2002) Structure 10: 865

Released	2002-06-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacillus sp. MN-32 synthetic construct
Macromolecule	ALDEHYDE INHIBITOR (protein) KUMAMOLYSIN (protein)
Unique Ligands	CA, SO4

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1NLU	Download File View File

Pseudomonas sedolisin (serine-carboxyl proteinase) complexed with two molecules of pseudo-iodotyrostatin

Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Glodfarb, N.E., Dunn, B.M., Oda, K.

(2004) Biochem Biophys Res Commun 314: 638-645

Released	2004-01-20
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Pseudomonas sp.
Macromolecule	PSEUDO-IODOTYROSTATIN (protein) SEDOLISIN (protein)
Unique Ligands	CA

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1S2B	Download File View File

Structure of SCP-B the first member of the Eqolisin family of Peptidases to have its structure determined

Fujinaga, M., Cherney, M.M., Oyama, H., Oda, K., James, M.N.

(2004) Proc Natl Acad Sci U S A 101: 3364-3369

Released	2004-04-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Scytalidium lignicola
Macromolecule	Scytalidopepsin B (protein)

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1S2K	Download File View File

Structure of SCP-B a member of the Eqolisin family of Peptidases in a complex with a Tripeptide Ala-Ile-His

Fujinaga, M., Cherney, M.M., Oyama, H., Oda, K., James, M.N.

(2004) Proc Natl Acad Sci U S A 101: 3364-3369

Released	2004-04-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Scytalidium lignicola
Macromolecule	Ala-Ile-His tripeptide (protein) Scytalidopepsin B (protein)
Unique Ligands	TYR

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1SIO	Download File View File

Structure of Kumamolisin-As complexed with a covalently-bound inhibitor, AcIPF

Li, M., Wlodawer, A., Gustchina, A., Tsuruoka, N., Ashida, M., Minakata, H., Oyama, H., Oda, K., Nishino, T., Nakayama, T.

(2004) J Biol Chem 279: 21500-21510

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Alicyclobacillus sendaiensis
Macromolecule	Ace-ILE-PRO-PHL peptide inhibitor (protein) kumamolisin-As (protein)
Unique Ligands	CA, SO4

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1SIU	Download File View File

KUMAMOLISIN-AS E78H MUTANT

Li, M., Wlodawer, A., Gustchina, A., Tsuruoka, N., Ashida, M., Minakata, H., Oyama, H., Oda, K., Nishino, T., Nakayama, T.

(2004) J Biol Chem 279: 21500-21510

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Alicyclobacillus sendaiensis
Macromolecule	kumamolisin-As (protein)
Unique Ligands	CA, SO4

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1SN7	Download File View File

KUMAMOLISIN-AS, APOENZYME

Wlodawer, A., Li, M., Gustchina, A., Oda, K., Nishino, T.

(2004) J Biol Chem 279: 21500-21510

Released	2004-06-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Alicyclobacillus sendaiensis
Macromolecule	kumamolisin-As (protein)
Unique Ligands	CA

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1T1E	Download File View File

High Resolution Crystal Structure of the Intact Pro-Kumamolisin, a Sedolisin Type Proteinase (previously called Kumamolysin or KSCP)

Comellas-Bigler, M., Maskos, K., Huber, R., Oyama, H., Oda, K., Bode, W.

(2004) Structure 12: 1313-1323

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.18 Å
Organisms	Bacillus sp. MN-32
Macromolecule	kumamolisin (protein)
Unique Ligands	CA

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1T1G	Download File View File

High Resolution Crystal Structure of Mutant E23A of Kumamolisin, a sedolisin type proteinase (previously called Kumamolysin or KSCP)

Comellas-Bigler, M., Maskos, K., Huber, R., Oyama, H., Oda, K., Bode, W.

(2004) Structure 12: 1313-1323

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.18 Å
Organisms	Bacillus sp. MN-32
Macromolecule	kumamolisin (protein)
Unique Ligands	CA, SO4

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1T1I	Download File View File

High Resolution Crystal Structure of Mutant W129A of Kumamolisin, a Sedolisin Type Proteinase (previously called Kumamolysin or KSCP)

Comellas-Bigler, M., Maskos, K., Huber, R., Oyama, H., Oda, K., Bode, W.

(2004) Structure 12: 1313-1323

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Bacillus sp. MN-32
Macromolecule	kumamolisin (protein)
Unique Ligands	CA, SO4

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2IFR	Download File View File

Crystal structure of Scytalido-glutamic peptidase with a peptide based transition state analog

Pillai, B., Cherney, M.M., Hiraga, K., Takada, K., Oda, K., James, M.N.

(2007) J Mol Biol 365: 343-361

Released	2006-10-03
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Scytalidium lignicola
Macromolecule	Octapeptide (protein) Scytalidopepsin B (protein)
Unique Ligands	ACY

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2IFW	Download File View File

Crystal structure of scytalido-glutamic peptidase with a transition state analog inhibitor

Pillai, B., Cherney, M.M., Hiraga, K., Takada, K., Oda, K., James, M.N.

(2007) J Mol Biol 365: 343-361

Released	2006-10-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Scytalidium lignicola
Macromolecule	Heptapeptide (protein) Scytalidopepsin B (protein)
Unique Ligands	ACY, GOL

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2ZW4	Download File View File

Crystal structure of bleomycin N-acetyltransferase complexed with coenzyme A in the orthorhombic crystal

Oda, K., Matoba, Y., Sugiyama, M.

(2010) J Biol Chem 285: 1446-1456

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptomyces verticillus
Macromolecule	Bleomycin acetyltransferase (protein)
Unique Ligands	COA, SO4

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2ZW5	Download File View File

Crystal structure of bleomycin N-acetyltransferase complexed with coenzyme A in the trigonal crystal

Oda, K., Matoba, Y., Sugiyama, M.

(2010) J Biol Chem 285: 1446-1456

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptomyces verticillus
Macromolecule	Bleomycin acetyltransferase (protein)
Unique Ligands	COA

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2ZW6	Download File View File

Crystal structure of bleomycin N-acetyltransferase from bleomycin-producing Streptomyces verticillus ATCC15003

Oda, K., Matoba, Y., Sugiyama, M.

(2010) J Biol Chem 285: 1446-1456

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptomyces verticillus
Macromolecule	Bleomycin acetyltransferase (protein)
Unique Ligands	SO4

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2ZW7	Download File View File

Crystal structure of bleomycin N-acetyltransferase complexed with bleomycin A2 and coenzyme A

Oda, K., Matoba, Y., Sugiyama, M.

(2010) J Biol Chem 285: 1446-1456

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptomyces verticillus
Macromolecule	Bleomycin acetyltransferase (protein)
Unique Ligands	BLM, COA

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3VVL	Download File View File

Crystal structure of L-serine-O-acetyltransferase found in D-cycloserine biosynthetic pathway

Oda, K., Matoba, Y., Kumagai, T., Noda, M., Sugiyama, M.

(2013) J Bacteriol 195: 1741-1749

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Streptomyces lavendulae subsp. lavendulae
Macromolecule	Homoserine O-acetyltransferase (protein)

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3VVM	Download File View File

Crystal structure of G52A-P55G mutant of L-serine-O-acetyltransferase found in D-cycloserine biosynthetic pathway

Oda, K., Matoba, Y., Kumagai, T., Noda, M., Sugiyama, M.

(2013) J Bacteriol 195: 1741-1749

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces lavendulae subsp. lavendulae
Macromolecule	Homoserine O-acetyltransferase (protein)

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3WWT	Download File View File

Crystal Structure of the Y3:STAT1ND complex

Oda, K., Sakaguchi, T., Matoba, Y.

(2015) J Virol 89: 11487-11499

Released	2015-07-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Sendai virus (Z)
Macromolecule	C' protein (protein) Signal transducer and activator of transcription 1-alpha/beta (protein)
Unique Ligands	CA