RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Escherichia coli DH5[alpha]"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Halomonas elongata (3)
	Ruegeria pomeroyi DSS-3 (2)
	Bacillus subtilis subsp. subtilis str. 168 (1)
	Escherichia coli (1)
	Escherichia coli DH5[alpha] (1)
	Escherichia coli K-12 (1)
	Methylophaga sulfidovorans (1)
	Synechococcus elongatus PCC 7942 = FACHB-805 (1)

Taxonomy

Bacteria (11)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	2.0 - 2.5 (6)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)

Release Date

2020 - 2024 (11)

Enzyme Classification Name

Hydrolases (7)

Symmetry Type

	Asymmetric (6)
	Cyclic (4)
	Dihedral (3)

AllSelected

1 to 11 of 11 Structures

Page 1 of 1

Sort by

Explore in 3D

6TWJ	Download File View File

Apo structure of the Ectoine utilization protein EutD (DoeA) from Halomonas elongata

Mais, C.-N., Altegoer, F., Bange, G.

(2020) J Biol Chem 295: 9087-9104

Released	2020-05-20
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Halomonas elongata
Macromolecule	Ectoine hydrolase DoeA (protein)

Explore in 3D

6TWK	Download File View File

Substrate bound structure of the Ectoine utilization protein EutD (DoeA) from Halomonas elongata

Mais, C.-N., Altegoer, F., Bange, G.

(2020) J Biol Chem 295: 9087-9104

Released	2020-05-20
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Halomonas elongata
Macromolecule	Ectoine hydrolase DoeA (protein)
Unique Ligands	4CS, P4B

Explore in 3D

6TWL	Download File View File

Apo structure of the Ectoine utilization protein EutE (DoeB) from Ruegeria pomeroyi

Mais, C.-N., Altegoer, F., Bange, G.

(2020) J Biol Chem 295: 9087-9104

Released	2020-05-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Ruegeria pomeroyi DSS-3
Macromolecule	N-acetyl-L-2,4-diaminobutyric acid deacetylase (protein)

Explore in 3D

6TWM	Download File View File

Product bound structure of the Ectoine utilization protein EutE (DoeB) from Ruegeria pomeroyi

Mais, C.-N., Altegoer, F., Bange, G.

(2020) J Biol Chem 295: 9087-9104

Released	2020-05-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Ruegeria pomeroyi DSS-3
Macromolecule	N-acetyl-L-2,4-diaminobutyric acid deacetylase (protein)
Unique Ligands	ACT, DAB, ZN

Explore in 3D

6YO9	Download File View File

Product bound structure of the Ectoine utilization protein EutD (DoeA) from Halomonas elongata

Mais, C.-N., Altegoer, F., Bange, G.

(2020) J Biol Chem 295: 9087-9104

Released	2020-05-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Halomonas elongata
Macromolecule	Ectoine hydrolase DoeA (protein)
Unique Ligands	GOL, P4B

Explore in 3D

7O9F	Download File View File

Bacillus subtilis Ffh in complex with ppGpp

Czech, L., Mais, C.-N., Bange, G.

(2022) Nat Commun 13: 1069-1069

Released	2022-02-02
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Signal recognition particle protein (protein)
Unique Ligands	G4P, MG

Explore in 3D

7O9G	Download File View File

Escherichia coli Ffh in complex with ppGpp

Czech, L., Mais, C.-N., Bange, G.

(2022) Nat Commun 13: 1069-1069

Released	2022-02-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	Signal recognition particle protein (protein)
Unique Ligands	G4P, MG

Explore in 3D

7O9H	Download File View File

Escherichia coli FtsY in complex with pppGpp

Czech, L., Mais, C.-N., Bange, G.

(2022) Nat Commun 13: 1069-1069

Released	2022-02-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli DH5[alpha]
Macromolecule	Signal recognition particle receptor FtsY (protein)
Unique Ligands	0O2

Explore in 3D

7O9I	Download File View File

Escherichia coli Ffh in complex with pppGpp

Czech, L., Mais, C.-N., Bange, G.

(2022) Nat Commun 13: 1069-1069

Released	2022-02-02
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Escherichia coli K-12
Macromolecule	Signal recognition particle protein (protein)
Unique Ligands	0O2

Explore in 3D

8BP7	Download File View File

Citrate-bound hexamer of Synechococcus elongatus citrate synthase

Mais, C.-N., Sendker, F., Bange, G.

(2024) Nature 628: 894-900

Released	2024-04-24
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Citrate synthase (protein)
Unique Ligands	CIT, MG, SO4

Explore in 3D

8QWB	Download File View File

Crystal structure of citrate synthase from Methylophaga sulfidovorans

Mais, C.-N., Bange, G., Sendker, F.L., Hochberg, G.

(2024) bioRxiv

Released	2024-07-31
Method	X-RAY DIFFRACTION 3.201 Å
Organisms	Methylophaga sulfidovorans
Macromolecule	Citrate synthase (protein)

1 to 11 of 11 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type