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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 18806800

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Search Summary

This query matches 62 Structures.

Refinements

Structure Determination Methodology

experimental (62)

Scientific Name of Source Organism

	Homo sapiens (16)
	Saccharomyces cerevisiae S288C (15)
	Kluyveromyces marxianus (6)
	Saccharomyces cerevisiae (6)
	Schizosaccharomyces pombe 972h- (6)
	Mus musculus (5)
	Caenorhabditis elegans (3)
	Rattus norvegicus (3)
	Arabidopsis thaliana (2)
	Archaeoglobus fulgidus DSM 4304 (2)

More...

Taxonomy

	Eukaryota (59)
	Archaea (3)
	Duplodnaviria (2)
	Eukaryota (eukaryotes) (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (55)
	SOLUTION NMR (6)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (62)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (14)
	2.0 - 2.5 (14)
	2.5 - 3.0 (12)
	3.0 - 3.5 (15)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (22)
	2015 - 2019 (19)
	2020 - 2024 (15)

Enzyme Classification Name

	Hydrolases (14)
	Transferases (9)
	Ligases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (47)
	Cyclic (16)
	Dihedral (2)
	Tetrahedral (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (17)
	Artifacts (4)
	All beta proteins (1)
	All alpha proteins (1)

AllSelected

1 to 25 of 62 Structures

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2KWC	Download File View File

The NMR structure of the autophagy-related protein Atg8

Kumeta, H., Watanabe, M., Nakatogawa, H., Yamaguchi, M., Ogura, K., Adachi, W., Fujioka, Y., Noda, N.N., Ohsumi, Y., Inagaki, F.

(2010) J Biomol NMR 47: 237-241

Released	2010-05-12
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Autophagy-related protein 8 (protein)

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2LI5	Download File View File

NMR structure of Atg8-Atg7C30 complex

Kumeta, H., Satoo, K., Noda, N.N., Fujioka, Y., Ogura, K., Nakatogawa, H., Ohsumi, Y., Inagaki, F.

(2011) Mol Cell 44: 462-475

Released	2011-11-16
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Autophagy-related protein 8 (protein) Ubiquitin-like modifier-activating enzyme ATG7 (protein)

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2LPU	Download File View File

Solution structures of KmAtg10

Yamaguchi, M., Noda, N.N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y., Inagaki, F.

(2012) Structure 20: 1244-1254

Released	2012-08-01
Method	SOLUTION NMR
Organisms	Kluyveromyces marxianus
Macromolecule	KmAtg10 (protein)

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2N5J	Download File View File

Regnase-1 N-terminal domain

Yokogawa, M., Tsushima, T., Noda, N.N., Kumeta, H., Adachi, W., Enokizono, Y., Yamashita, K., Standley, D.M., Takeuchi, O., Akira, S., Inagaki, F.

(2016) Sci Rep 6: 22324-22324

Released	2016-03-16
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Ribonuclease ZC3H12A (protein)

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2N5K	Download File View File

Regnase-1 Zinc finger domain

Yokogawa, M., Tsushima, T., Noda, N.N., Kumeta, H., Adachi, W., Enokizono, Y., Yamashita, K., Standley, D.M., Takeuchi, O., Akira, S., Inagaki, F.

(2016) Sci Rep 6: 22324-22324

Released	2016-03-16
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Ribonuclease ZC3H12A (protein)
Unique Ligands	ZN

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2N5L	Download File View File

Regnase-1 C-terminal domain

Yokogawa, M., Tsushima, T., Noda, N.N., Kumeta, H., Adachi, W., Enokizono, Y., Yamashita, K., Standley, D.M., Takeuchi, O., Akira, S., Inagaki, F.

(2016) Sci Rep 6: 22324-22324

Released	2016-03-16
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Ribonuclease ZC3H12A (protein)

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2Z0D	Download File View File

The crystal structure of human Atg4B- LC3(1-120) complex

Satoo, K., Noda, N.N., Inagaki, F.

(2009) EMBO J 28: 1341-1350

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Cysteine protease ATG4B (protein) Microtubule-associated proteins 1A/1B light chain 3B (protein)

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2Z0E	Download File View File

The crystal structure of human Atg4B- LC3(1-124) complex

Satoo, K., Noda, N.N., Inagaki, F.

(2009) EMBO J 28: 1341-1350

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Cysteine protease ATG4B (protein) Microtubule-associated proteins 1A/1B light chain 3B (protein)

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2ZPN	Download File View File

The crystal structure of Saccharomyces cerevisiae Atg8- Atg19(412-415) complex

Noda, N.N., Inagaki, F.

(2008) Genes Cells 13: 1211-1218

Released	2008-12-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	Autophagy-related protein 8 (protein) Saccharomyces cerevisiae Atg19(412-415) (protein)
Unique Ligands	SO4

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2ZZP	Download File View File

The crystal structure of human Atg4B(C74S)- LC3(1-124) complex

Satoo, K., Noda, N.N., Inagaki, F.

(2009) EMBO J 28: 1341-1350

Released	2009-03-03
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Cysteine protease ATG4B (protein) Microtubule-associated proteins 1A/1B light chain 3B (protein)

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3A77	Download File View File

The crystal structure of phosphorylated IRF-3

Takahasi, K., Horiuchi, M., Noda, N.N., Inagaki, F.

(2010) Genes Cells 15: 901-910

Released	2010-08-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Interferon regulatory factor 3 (protein)
Unique Ligands	ACY, MPD

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3A7O	Download File View File

The crystal structure of the coiled-coil domain of Saccharomyces cerevisiae Atg16

Fujioka, Y., Noda, N.N., Inagaki, F.

(2010) J Biological Chem 285: 1508-1515

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Autophagy protein 16 (protein)

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3A7P	Download File View File

The crystal structure of Saccharomyces cerevisiae Atg16

Fujioka, Y., Noda, N.N., Inagaki, F.

(2010) J Biological Chem 285: 1508-1515

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Autophagy protein 16 (protein)

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3VGO	Download File View File

Crystal structure of the N-terminal fragment of Cbl-b

Kobashigawa, Y., Noda, N.N., Inagaki, F.

(2011) Proc Natl Acad Sci U S A 108: 20579-20584

Released	2011-12-14
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase CBL-B (protein)

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3VGP	Download File View File

Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (AF_0329) from Archaeoglobus fulgidus

Matsumoto, S., Igura, M., Nyirenda, J., Yuzawa, S., Noda, N.N., Inagaki, F., Kohda, D.

(2012) Biochemistry 51: 4157-4166

Released	2012-07-04
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	Transmembrane oligosaccharyl transferase, putative (protein)

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3VH1	Download File View File

Crystal structure of Saccharomyces cerevisiae Atg7 (1-595)

Noda, N.N., Satoo, K., Inagaki, F.

(2011) Mol Cell 44: 462-475

Released	2011-09-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like modifier-activating enzyme ATG7 (protein)
Unique Ligands	ZN

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3VH2	Download File View File

Crystal structure of Saccharomyces cerevisiae Atg7 (1-613)

Noda, N.N., Satoo, K., Inagaki, F.

(2011) Mol Cell 44: 462-475

Released	2011-09-21
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like modifier-activating enzyme ATG7 (protein)
Unique Ligands	ZN

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3VH3	Download File View File

Crystal structure of Atg7CTD-Atg8 complex

Noda, N.N., Satoo, K., Inagaki, F.

(2011) Mol Cell 44: 462-475

Released	2011-09-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Autophagy-related protein 8 (protein) Ubiquitin-like modifier-activating enzyme ATG7 (protein)
Unique Ligands	ZN

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3VH4	Download File View File

Crystal structure of Atg7CTD-Atg8-MgATP complex

Noda, N.N., Satoo, K., Inagaki, F.

(2011) Mol Cell 44: 462-475

Released	2011-09-21
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Autophagy-related protein 8 (protein) Ubiquitin-like modifier-activating enzyme ATG7 (protein)
Unique Ligands	ATP, MG, ZN

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3VP7	Download File View File

Crystal structure of the beta-alpha repeated, autophagy-specific (BARA) domain of Vps30/Atg6

Noda, N.N., Kobayashi, T., Adachi, W., Fujioka, Y., Ohsumi, Y., Inagaki, F.

(2012) J Biological Chem 287: 16256-16266

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Vacuolar protein sorting-associated protein 30 (protein)

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3VQI	Download File View File

Crystal structure of Kluyveromyces marxianus Atg5

Yamaguchi, M., Noda, N.N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y., Inagaki, F.

(2012) Structure 20: 1244-1254

Released	2012-08-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Kluyveromyces marxianus
Macromolecule	Atg5 (protein)
Unique Ligands	EPE, SO4

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3VU0	Download File View File

Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (AfAglB-S2, AF_0040, O30195_ARCFU) from Archaeoglobus fulgidus

Nyirenda, J., Matsumoto, S., Saitoh, T., Maita, N., Noda, N.N., Inagaki, F., Kohda, D.

(2013) Structure 21: 32-41

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	MES

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3VU1	Download File View File

Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (PhAglB-L, O74088_PYRHO) from Pyrococcus horikoshii

Nyirenda, J., Matsumoto, S., Saitoh, T., Maita, N., Noda, N.N., Inagaki, F., Kohda, D.

(2013) Structure 21: 32-41

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Putative uncharacterized protein PH0242 (protein)
Unique Ligands	CA, CL

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3VU4	Download File View File

Crystal structure of Kluyvelomyces marxianus Hsv2

Watanabe, Y., Noda, N.N.

(2012) J Biological Chem 287: 31681-31690

Released	2012-07-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Kluyveromyces marxianus
Macromolecule	KmHsv2 (protein)
Unique Ligands	SO4

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3VX6	Download File View File

Crystal structure of Kluyveromyces marxianus Atg7NTD

Yamaguchi, M., Matoba, K., Sawada, R., Fujioka, Y., Nakatogawa, H., Yamamoto, H., Kobashigawa, Y., Hoshida, H., Akada, R., Ohsumi, Y., Noda, N.N., Inagaki, F.

(2012) Nat Struct Mol Biol 19: 1250-1256

Released	2012-11-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Kluyveromyces marxianus
Macromolecule	E1 (protein)

1 to 25 of 62 Structures

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