RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: PubMed ID = 20404169

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	enterovirus D68 (9)
	Acidianus ambivalens (1)
	Human betacoronavirus 2c EMC/2012 (1)

Taxonomy

	Riboviria (10)
	Archaea (1)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (7)
	2.5 - 3.0 (3)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (10)

Enzyme Classification Name

Hydrolases (9)

Symmetry Type

	Cyclic (10)
	Asymmetric (1)

SCOP Classification

	All beta proteins (9)
	Alpha and beta proteins (a+b) (2)
	Artifacts (9)

AllSelected

1 to 11 of 11 Structures

Page 1 of 1

Sort by

Explore in 3D

2VKR	Download File View File

3Fe-4S, 4Fe-4S plus Zn Acidianus ambivalens ferredoxin

Frazao, C., Aragao, D., Coelho, R., Leal, S.S., Gomes, C.M., Teixeira, M., Carrondo, M.A.

(2008) FEBS Lett 582: 763-767

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Acidianus ambivalens
Macromolecule	ZINC-CONTAINING FERREDOXIN (protein)
Unique Ligands	F3S, SF4, ZN

Explore in 3D

3ZV8	Download File View File

Crystal structure of 3C protease of Enterovirus 68

Tan, J., Perbandt, M., Mesters, J.R., Hilgenfeld, R.

(2013) J Virol 87: 4339

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	enterovirus D68
Macromolecule	3C PROTEASE (protein)

Explore in 3D

3ZV9	Download File View File

3C protease of Enterovirus 68 complexed with Michael receptor inhibitor 74

Tan, J., Perbandt, M., Mesters, J.R., Hilgenfeld, R.

(2013) J Virol 87: 4339

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	enterovirus D68
Macromolecule	3C PROTEASE (protein)
Unique Ligands	G74

Explore in 3D

3ZVA	Download File View File

3C protease of Enterovirus 68 complexed with Michael receptor inhibitor 75

Tan, J., Perbandt, M., Mesters, J.R., Hilgenfeld, R.

(2013) J Virol 87: 4339

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	enterovirus D68
Macromolecule	3C PROTEASE (protein)
Unique Ligands	G75

Explore in 3D

3ZVB	Download File View File

3C protease of Enterovirus 68 complexed with Michael receptor inhibitor 81

Tan, J., Perbandt, M., Mesters, J.R., Hilgenfeld, R.

(2013) J Virol 87: 4339

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	enterovirus D68
Macromolecule	3C PROTEASE (protein)
Unique Ligands	G81

Explore in 3D

3ZVC	Download File View File

3C protease of Enterovirus 68 complexed with Michael receptor inhibitor 82

Tan, J., Perbandt, M., Mesters, J.R., Hilgenfeld, R.

(2013) J Virol 87: 4339

Released	2012-08-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	enterovirus D68
Macromolecule	3C PROTEASE (protein)
Unique Ligands	G82

Explore in 3D

3ZVD	Download File View File

3C protease of Enterovirus 68 complexed with Michael receptor inhibitor 83

Tan, J., Perbandt, M., Mesters, J.R., Hilgenfeld, R.

(2013) J Virol 87: 4339

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	enterovirus D68
Macromolecule	3C PROTEASE (protein)
Unique Ligands	G83

Explore in 3D

3ZVE	Download File View File

3C protease of Enterovirus 68 complexed with Michael receptor inhibitor 84

Tan, J., Perbandt, M., Mesters, J.R., Hilgenfeld, R.

(2013) J Virol 87: 4339

Released	2012-08-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	enterovirus D68
Macromolecule	3C PROTEASE (protein)
Unique Ligands	G84

Explore in 3D

3ZVF	Download File View File

3C protease of Enterovirus 68 complexed with Michael receptor inhibitor 85

Tan, J., Perbandt, M., Mesters, J.R., Hilgenfeld, R.

(2013) J Virol 87: 4339

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	enterovirus D68
Macromolecule	3C PROTEASE (protein)
Unique Ligands	G85

Explore in 3D

3ZVG	Download File View File

3C protease of Enterovirus 68 complexed with Michael receptor inhibitor 98

Tan, J., Perbandt, M., Mesters, J.R., Hilgenfeld, R.

(2013) J Virol 87: 4339

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	enterovirus D68
Macromolecule	3C PROTEASE (protein)
Unique Ligands	G86

Explore in 3D

4P16	Download File View File

Crystal structure of the papain-like protease of Middle-East Respiratory Syndrome coronavirus

Lei, J., Mesters, J.R., Ma, Q., Hilgenfeld, R.

(2014) Antiviral Res 109C: 72-82

Released	2014-05-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human betacoronavirus 2c EMC/2012
Macromolecule	ORF1a (protein)
Unique Ligands	ZN

1 to 11 of 11 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification