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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 25327248

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Search Summary

This query matches 41 Structures.

Refinements

Structure Determination Methodology

experimental (41)

Scientific Name of Source Organism

	Enterovirus A71 (10)
	Bacillus sp. (in: firmicutes) (4)
	Helicobacter pylori (3)
	Homo sapiens (3)
	Rhizorhabdus wittichii RW1 (3)
	synthetic construct (2)
	unidentified tobacco necrosis virus (2)
	Aeribacillus pallidus (1)
	Black beetle virus (1)
	Caldanaerobacter subterraneus subsp. tengcongensis MB4 (1)

More...

Taxonomy

	Riboviria (19)
	Bacteria (15)
	Eukaryota (5)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (41)

Polymer Entity Type

	Protein (41)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (9)
	2.0 - 2.5 (6)
	2.5 - 3.0 (8)
	3.0 - 3.5 (8)
	3.5 - 4.0 (6)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (1)
	2000 - 2004 (5)
	2005 - 2009 (5)
	2010 - 2014 (16)
	2015 - 2019 (7)
	2020 - 2024 (5)

Enzyme Classification Name

	Hydrolases (8)
	Lyases (4)
	Transferases (1)

Symmetry Type

	Icosahedral (20)
	Dihedral (10)
	Asymmetric (6)
	Tetrahedral (4)
	Cyclic (2)

SCOP Classification

	All beta proteins (11)
	Alpha and beta proteins (a/b) (5)
	Low resolution protein structures (1)
	Alpha and beta proteins (a+b) (2)
	All alpha proteins (1)
	Artifacts (1)

AllSelected

1 to 25 of 41 Structures

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1C8N	Download File View File

TOBACCO NECROSIS VIRUS

Oda, Y., Fukuyama, K.

(2000) J Mol Biol 300: 153-169

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	unidentified tobacco necrosis virus
Macromolecule	COAT PROTEIN (protein)
Unique Ligands	CA

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1DDL	Download File View File

DESMODIUM YELLOW MOTTLE TYMOVIRUS

Larson, S.B., Day, J., Canady, M.A., Greenwood, A., McPherson, A.

(2000) J Mol Biol 301: 625-642

Released	2000-10-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Desmodium yellow mottle virus
Macromolecule	DESMODIUM YELLOW MOTTLE VIRUS (protein) RNA (5'-R(PUPU)-3') (nucleic acid) RNA (5'-R(PUPUPUPUPUPUP*U)-3') (nucleic acid)

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1F15	Download File View File

CUCUMBER MOSAIC VIRUS (STRAIN FNY)

Smith, T.J., Chase, E., Schmidt, T., Perry, K.

(2000) J Virol 74: 7578-7586

Released	2000-06-21
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Cucumber mosaic virus (strain FNY)
Macromolecule	COAT PROTEIN (protein)

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1J2Y	Download File View File

Crystal structure of the type II 3-dehydroquinase

Lee, B.I., Kwak, J.E., Suh, S.W.

(2003) Proteins 51: 616-617

Released	2003-06-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Helicobacter pylori
Macromolecule	3-dehydroquinate dehydratase (protein)
Unique Ligands	DQA

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1STM	Download File View File

SATELLITE PANICUM MOSAIC VIRUS

Ban, N., McPherson, A.

(1995) Nat Struct Biol 2: 882-890

Released	1997-01-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Panicum mosaic satellite virus
Macromolecule	SATELLITE PANICUM MOSAIC VIRUS (protein)

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1TNV	Download File View File

CRYSTAL STRUCTURAL ANALYSIS OF TOBACCO NECROSIS VIRUS (TNV) AT 5 ANGSTROMS RESOLUTION

Tsukihara, T.

(1994) Acta Crystallogr D Biol Crystallogr 50: 878-883

Released	1994-12-20
Method	X-RAY DIFFRACTION 5 Å
Organisms	unidentified tobacco necrosis virus
Macromolecule	TOBACCO NECROSIS VIRUS (SUBUNIT VP1) (protein) TOBACCO NECROSIS VIRUS (SUBUNIT VP3) (protein)

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1XBN	Download File View File

Crystal structure of a bacterial nitric oxide sensor: an ortholog of mammalian soluble guanylate cyclase heme domain

Nioche, P., Raman, C.S.

(2004) Science 306: 1550-1553

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Caldanaerobacter subterraneus subsp. tengcongensis MB4
Macromolecule	Methyl-accepting chemotaxis protein (protein)
Unique Ligands	HEM, OXY

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1Z7S	Download File View File

The crystal structure of coxsackievirus A21

Xiao, C., Bator-Kelly, C.M., Rieder, E., Chipman, P.R., Craig, A., Kuhn, R.J., Wimmer, E., Rossmann, M.G.

(2005) Structure 13: 1019-1033

Released	2005-08-02
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Coxsackievirus A21
Macromolecule	Human COXSACKIEVIRUS A21 (protein) Human coxsackievirus A21 (protein)
Unique Ligands	5GP, CA, MYR

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2BBV	Download File View File

THE REFINED THREE-DIMENSIONAL STRUCTURE OF AN INSECT VIRUS AT 2.8 ANGSTROMS RESOLUTION

Wery, J.-P., Reddy, V.S., Hosur, M.V., Johnson, J.E.

(1994) J Mol Biol 235: 565-586

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Black beetle virus
Macromolecule	PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) (protein) RNA (5'-R(UPCPUPUPAPUPAPUPCPU)-3') (nucleic acid)
Unique Ligands	CA

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2C4V	Download File View File

H. pylori type II DHQase in complex with citrate

Robinson, D.A., Lapthorn, A.J.

(2006) J Med Chem 49: 1282

Released	2006-02-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Helicobacter pylori
Macromolecule	3-DEHYDROQUINATE DEHYDRATASE (protein)
Unique Ligands	CIT

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2EF4	Download File View File

Crystal structure of the arginase from thermus thermophilus

Kumarevel, T.S., Karthe, P., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-04-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus thermophilus
Macromolecule	Arginase (protein)

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2PLQ	Download File View File

Crystal structure of the amidase from geobacillus pallidus RAPc8

Kimani, S.W., Sewell, B.T., Agarkar, V.B., Sayed, M.F., Cowan, D.A.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 1174-1178

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aeribacillus pallidus
Macromolecule	Aliphatic amidase (protein)

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2XDA	Download File View File

STRUCTURE OF HELICOBACTER PYLORI TYPE II DEHYDROQUINASE IN COMPLEX WITH INHIBITOR COMPOUND (4R,6R,7S)-2-(2-Cyclopropyl)ethyl-4,6,7- trihydroxy-4,5,6,7-tetrahydrobenzo(b)thiophene-4-carboxylic acid

Paz, S., Tizon, L., Otero, J.M., Llamas-Saiz, A.L., Fox, G.C., van Raaij, M.J., Lamb, H., Hawkins, A.R., Castedo, L., Gonzalez-Bello, C.

(2011) ChemMedChem 6: 266-272

Released	2010-11-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Helicobacter pylori
Macromolecule	3-DEHYDROQUINATE DEHYDRATASE (protein)
Unique Ligands	JPS

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3E0W	Download File View File

Crystal structure of pyruvate kinase from Leishmania mexicana

Tulloch, L.B., Gillmore, L.A., Walkinshaw, M.D.

(2008) J Mol Biol 383: 615-626

Released	2008-08-19
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Leishmania mexicana
Macromolecule	Pyruvate kinase (protein)

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3VBO	Download File View File

Crystal structure of formaldehyde treated empty human Enterovirus 71 particle (cryo at 100K)

Wang, X., Peng, W., Ren, J., Hu, Z., Xu, J., Lou, Z., Li, X., Yin, W., Shen, X., Porta, C., Walter, T.S., Evans, G., Axford, D., Owen, R., Rowlands, D.J., Wang, J., Stuart, D.I., Fry, E.E., Rao, Z.

(2012) Nat Struct Mol Biol 19: 424-429

Released	2012-02-29
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	Enterovirus A71
Macromolecule	Genome Polyprotein, capsid protein VP1 (protein) Genome Polyprotein, capsid protein VP2 (protein) Genome Polyprotein, capsid protein VP3 (protein)
Unique Ligands	NA

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3VBR	Download File View File

Crystal structure of formaldehyde treated empty human Enterovirus 71 particle (room temperature)

Wang, X., Peng, W., Ren, J., Hu, Z., Xu, J., Lou, Z., Li, X., Yin, W., Shen, X., Porta, C., Walter, T.S., Evans, G., Axford, D., Owen, R., Rowlands, D.J., Wang, J., Stuart, D.I., Fry, E.E., Rao, Z.

(2012) Nat Struct Mol Biol 19: 424-429

Released	2012-02-29
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Enterovirus A71
Macromolecule	Genome Polyprotein, capsid protein VP0 (protein) Genome Polyprotein, capsid protein VP1 (protein) Genome Polyprotein, capsid protein VP3 (protein)

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3VBU	Download File View File

Crystal structure of empty human Enterovirus 71 particle

Wang, X., Peng, W., Ren, J., Hu, Z., Xu, J., Lou, Z., Li, X., Yin, W., Shen, X., Porta, C., Walter, T.S., Evans, G., Axford, D., Owen, R., Rowlands, D.J., Wang, J., Stuart, D.I., Fry, E.E., Rao, Z.

(2012) Nat Struct Mol Biol 19: 424-429

Released	2012-02-29
Method	X-RAY DIFFRACTION 4 Å
Organisms	Enterovirus A71
Macromolecule	Genome Polyprotein, capsid protein VP0 (protein) Genome Polyprotein, capsid protein VP1 (protein) Genome Polyprotein, capsid protein VP3 (protein)

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4CYA	Download File View File

DpsA15 from Streptomyces coelicolor

Townsend, P.D., Hitchings, M.D., Del Sol, R., Pohl, E.

(2014) Cell Mol Life Sci 71: 4911

Released	2014-06-25
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Streptomyces coelicolor
Macromolecule	DPSA15 (protein)

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4GMP	Download File View File

Crystal structure of enterovirus 71 strain 1095 procapsid

Yoder, J.D., Hafenstein, S.

(2013) J Virol 87: 7637-7645

Released	2013-05-15
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Enterovirus A71
Macromolecule	capsid protein VP0 (protein) capsid protein VP1 (protein) capsid protein VP3 (protein)

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4GYL	Download File View File

The E142L mutant of the amidase from Geobacillus pallidus showing the result of Michael addition of acrylamide at the active site cysteine

Weber, B.W., Sewell, B.T., Kimani, S.W., Varsani, A., Cowan, D.A., Hunter, R.

(2013) J Biol Chem 288: 28514-28523

Released	2013-08-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus sp. (in: firmicutes)
Macromolecule	Aliphatic amidase (protein)
Unique Ligands	CL, ROP

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4GYN	Download File View File

The E142L mutant of the amidase from Geobacillus pallidus

Weber, B.W., Sewell, B.T., Kimani, S.W., Varsani, A., Cowan, D.A., Hunter, R.

(2013) J Biol Chem 288: 28514-28523

Released	2013-08-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus sp. (in: firmicutes)
Macromolecule	Aliphatic amidase (protein)
Unique Ligands	CL

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4HP9	Download File View File

Crystal structure of the N-terminal truncated PAS domain from the hERG potassium channel

Adaixo, R., Morais-Cabral, J.H., Harley, C.A.

(2013) PLoS One 8: e59265-e59265

Released	2013-03-27
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Homo sapiens
Macromolecule	Potassium voltage-gated channel subfamily H member 2 (protein)

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4JGY	Download File View File

Crystal structure of human coxsackievirus A16 uncoating intermediate (space group P4232)

Ren, J., Wang, X., Hu, Z., Gao, Q., Sun, Y., Li, X., Porta, C., Walter, T.S., Gilbert, R.J., Zhao, Y., Axford, D., Williams, M., Mcauley, K., Rowlands, D.J., Yin, W., Wang, J., Stuart, D.I., Rao, Z., Fry, E.E.

(2013) Nat Commun 4: 1929-1929

Released	2013-06-05
Method	X-RAY DIFFRACTION 3 Å
Organisms	Coxsackievirus A16
Macromolecule	Polyprotein, capsid protein VP1 (protein) Polyprotein, capsid protein VP2 (protein) Polyprotein, capsid protein VP3 (protein)