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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 31375673

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Search Summary

This query matches 3 Structures.

Refinements

Structure Determination Methodology

experimental (3)

Scientific Name of Source Organism

	Homo sapiens (2)
	DNA molecule (1)
	Monkeypox virus (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (2)
	Varidnaviria (1)
	other sequences (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (2)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (3)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	3.0 - 3.5 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (2)
	Transferases (2)

Symmetry Type

	Asymmetric (2)
	Dihedral (1)

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1 to 3 of 3 Structures

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6DW3	Download File View File

SAMHD1 Bound to Cytarabine-TP in the Catalytic Pocket

Knecht, K.M., Buzovetsky, O., Schneider, C., Thomas, D., Srikanth, V., Kaderali, L., Tofoleanu, F., Reiss, K., Ferreiros, N., Geisslinger, G., Batista, V.S., Ji, X., Cinatl, J., Keppler, O.T., Xiong, Y.

(2018) Proc Natl Acad Sci U S A 115: E10022-E10031

Released	2018-10-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 (protein)
Unique Ligands	DTP, GTP, HF4, MG

Explore in 3D

8K8S	Download File View File

F8-A22-E4 complex of MPXV in complex with DNA and Ara-CTP

Shen, Y.P., Li, Y.N., Yan, R.H.

(2024) Structure 32: 654-661.e3

Released	2024-06-05
Method	ELECTRON MICROSCOPY 3.06 Å
Organisms	DNA molecule Monkeypox virus
Macromolecule	DNA polymerase F8 (protein) DNA polymerase processivity factor component A20 (protein) Uracil-DNA glycosylase E4 (protein) DNA (5'-D(APTPCPCPTPCPCPCPCPTPAPC)-3') (nucleic acid) DNA (5'-D(PTPAPGPGPTPAPGPGPGPGPAPGPGPAP*T)-3') (nucleic acid)
Unique Ligands	HF4, MG

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8V7B	Download File View File

Human DNA polymerase eta-DNA-dT primer araCTP insertion ternary complex at pH7.0 (K+ MES) with 1 Ca2+ ion

Chang, C., Gao, Y.

To be published

Released	2024-05-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT())-3') (nucleic acid) DNA (5'-D(CPAPTPGPAPTPGPAPCPGPCP*T)-3') (nucleic acid)
Unique Ligands	CA, GOL, HF4, K

1 to 3 of 3 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

6DW3

SAMHD1 Bound to Cytarabine-TP in the Catalytic Pocket

8K8S

F8-A22-E4 complex of MPXV in complex with DNA and Ara-CTP

8V7B

Human DNA polymerase eta-DNA-dT primer araCTP insertion ternary complex at pH7.0 (K+ MES) with 1 Ca2+ ion