RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: PubMed ID = 31900356

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (10)
	Homo sapiens (6)
	Bos taurus (1)
	Mus musculus (1)

Taxonomy

	Riboviria (10)
	Eukaryota (7)

Experimental Method

	ELECTRON MICROSCOPY (10)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	3.0 - 3.5 (4)
	3.5 - 4.0 (5)
	4.0 - 4.5 (1)

Release Date

2020 - 2024 (11)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Asymmetric (7)
	Cyclic (4)

AllSelected

1 to 11 of 11 Structures

Page 1 of 1

Sort by

Explore in 3D

7EDF	Download File View File

Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7), one RBD-up conformation 1

Yang, T.J., Yu, P.Y., Chang, Y.C., Wu, H.C., Hsu, S.T.D.

(2021) Nat Struct Mol Biol 28: 731-739

Released	2021-09-01
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

7EDG	Download File View File

Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7), one RBD-up conformation 2

Yang, T.J., Yu, P.Y., Chang, Y.C., Wu, H.C., Hsu, S.T.D.

(2021) Nat Struct Mol Biol 28: 731-739

Released	2021-09-01
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

7EDH	Download File View File

Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7), one RBD-up conformation 3

Yang, T.J., Yu, P.Y., Chang, Y.C., Wu, H.C., Hsu, S.T.D.

(2021) Nat Struct Mol Biol 28: 731-739

Released	2021-09-01
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

7EDI	Download File View File

Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7), two RBD-up conformation

Yang, T.J., Yu, P.Y., Chang, Y.C., Wu, H.C., Hsu, S.T.D.

(2021) Nat Struct Mol Biol 28: 731-739

Released	2021-09-01
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7EDJ	Download File View File

Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain

Yang, T.J., Yu, P.Y., Chang, Y.C., Wu, H.C., Hsu, S.T.D.

(2021) Nat Struct Mol Biol 28: 731-739

Released	2021-09-01
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (ACE2) ectodomain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7EH5	Download File View File

Cryo-EM structure of SARS-CoV-2 S-D614G variant in complex with neutralizing antibodies, RBD-chAb15 and RBD-chAb45

Yang, T.J., Yu, P.Y., Chang, Y.C., Wu, H.C., Hsu, S.T.D.

(2021) Nat Struct Mol Biol 28: 731-739

Released	2021-09-01
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	RBD-chAb15, heavy chain (protein) RBD-chAb15, light chain (protein) RBD-chAb45, heavy chain (protein) RBD-chAb45, light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7EJ4	Download File View File

Cryo-EM structure of SARS-CoV-2 spike in complex with a neutralizing antibody RBD-chAb-25

Yang, T.J., Yu, P.Y., Wu, H.C., Hsu, S.T.D.

To be published

Released	2021-06-23
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	RBD-chAb-25, Heavy chain (protein) RBD-chAb-25, Light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7EJ5	Download File View File

Cryo-EM structure of SARS-CoV-2 spike in complex with a neutralizing antibody RBD-chAb-45

Yang, T.J., Yu, P.Y., Wu, H.C., Hsu, S.T.D.

To be published

Released	2021-06-23
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	RBD-chAb45, Heavy chain (protein) RBD-chAb45, Light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7F62	Download File View File

Cryo-EM structure of SARS-CoV-2 spike in complex with a neutralizing antibody chAb-25 (Focused refinement of S-RBD and chAb-25 region)

Yang, T.J., Yu, P.Y., Wu, H.C., Hsu, S.T.D.

(2021) PLoS Pathog 17: e1009704-e1009704

Released	2021-08-04
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	RBD-chAb-25, Heavy chain (protein) RBD-chAb-25, Light chain (protein) Spike glycoprotein (protein)

Explore in 3D

7F63	Download File View File

Cryo-EM structure of SARS-CoV-2 spike in complex with a neutralizing antibody chAb-45 (Focused refinement of S-RBD and chAb-45 region)

Yang, T.J., Yu, P.Y., Wu, H.C., Hsu, S.T.D.

(2021) PLoS Pathog 17: e1009704-e1009704

Released	2021-08-04
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	RBD-chAb45, Heavy chain (protein) RBD-chAb45, Light chain (protein) Spike glycoprotein (protein)

Explore in 3D

7WG3	Download File View File

Structural basis of interleukin-17B receptor in complex with a neutralizing antibody D9 for guiding humanization and affinity maturation for cancer therapy

Lee, W.H., Chen, X.R., Liu, I.J., Lee, J.H., Hu, C.M., Wu, H.C., Wang, S.K., Lee, W.H., Ma, C.

(2022) Cell Rep 41: 111555-111555

Released	2022-11-09
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Bos taurus Mus musculus
Macromolecule	Heavy chain of D9 Fab (protein) IL17RB protein (protein) Light chain of D9 Fab (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

1 to 11 of 11 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type