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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 37951994

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Search Summary

This query matches 123 Structures.

Refinements

Structure Determination Methodology

experimental (123)

Scientific Name of Source Organism

	Sus scrofa (75)
	Homo sapiens (29)
	Enterococcus faecalis (5)
	Bos taurus (3)
	Methanothermobacter thermautotrophicus str. Delta H (3)
	Streptomyces griseoviridis (3)
	artificial sequences (2)
	synthetic construct (2)
	Arabidopsis thaliana (1)
	Methanocaldococcus jannaschii (1)

More...

Taxonomy

	Eukaryota (106)
	Bacteria (8)
	Archaea (5)
	other sequences (4)
	Riboviria (2)

Experimental Method

	ELECTRON MICROSCOPY (94)
	X-RAY DIFFRACTION (28)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (123)
	RNA (4)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (19)
	2.5 - 3.0 (47)
	3.0 - 3.5 (37)
	3.5 - 4.0 (11)
	4.0 - 4.5 (3)
	> 4.5 (3)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (9)
	2015 - 2019 (19)
	2020 - 2024 (94)

Enzyme Classification Name

	Translocases (82)
	Oxidoreductases (9)
	Transferases (10)
	Hydrolases (8)
	Lyases (5)
	Ligases (4)

Membrane Protein Annotation

	PDBTM (70)
	OPM (30)
	mpstruc (22)
	MemProtMD (10)

Symmetry Type

	Asymmetric (94)
	Cyclic (32)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (1)
	Small proteins (2)
	All alpha proteins (1)
	Coiled coil proteins (1)
	All beta proteins (1)
	Artifacts (1)

AllSelected

1 to 25 of 123 Structures

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1NH9	Download File View File

Crystal Structure of a DNA Binding Protein Mja10b from the hyperthermophile Methanococcus jannaschii

Wang, G., Bartlam, M., Guo, R., Yang, H., Xue, H., Liu, Y., Huang, L., Rao, Z.

(2003) Protein Sci 12: 2815-2822

Released	2003-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	DNA-binding protein Alba (protein)

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3NBH	Download File View File

Crystal structure of human RMI1C-RMI2 complex

Wang, F., Yang, Y., Singh, T.R., Busygina, V., Guo, R., Wan, K., Wang, W., Sung, P., Meetei, A.R., Lei, M.

(2010) Structure 18: 1159-1170

Released	2010-09-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	RecQ-mediated genome instability protein 1 (protein) RecQ-mediated genome instability protein 2 (protein)

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3NBI	Download File View File

Crystal structure of human RMI1 N-terminus

Wang, F., Yang, Y., Singh, T.R., Busygina, V., Guo, R., Wan, K., Wang, W., Sung, P., Meetei, A.R., Lei, M.

(2010) Structure 18: 1159-1170

Released	2010-09-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	RecQ-mediated genome instability protein 1 (protein)

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3Q96	Download File View File

B-Raf kinase domain in complex with a tetrahydronaphthalene inhibitor

Sintchak, M.D., Aertgeerts, K., Yano, J.

(2011) J Med Chem 54: 1836-1846

Released	2011-03-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase B-raf (protein)
Unique Ligands	0NF

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3SOU	Download File View File

Structure of UHRF1 PHD finger in complex with histone H3 1-9 peptide

Rajakumara, E., Patel, D.J.

(2011) Mol Cell 43: 275-284

Released	2011-08-03
Method	X-RAY DIFFRACTION 1.8001 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase UHRF1 (protein) Histone H3 (protein)
Unique Ligands	ZN

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3SOW	Download File View File

Structure of UHRF1 PHD finger in complex with histone H3K4me3 1-9 peptide

Rajakumara, E., Patel, D.J.

(2011) Mol Cell 43: 275-284

Released	2011-08-03
Method	X-RAY DIFFRACTION 1.9501 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase UHRF1 (protein) Histone H3 (protein)
Unique Ligands	ZN

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3SOX	Download File View File

Structure of UHRF1 PHD finger in the free form

Rajakumara, E., Patel, D.J.

(2011) Mol Cell 43: 275-284

Released	2011-08-03
Method	X-RAY DIFFRACTION 2.6501 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase UHRF1 (protein)
Unique Ligands	ZN

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3WBM	Download File View File

Crystal Structure of protein-RNA complex

Ding, J., Wang, D.C.

(2014) J Biol Chem 289: 1478-1490

Released	2013-12-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharolobus shibatae synthetic construct
Macromolecule	DNA/RNA-binding protein Alba 1 (protein) RNA (25-MER) (nucleic acid)

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4PV7	Download File View File

Cocrystal structure of dipeptidyl-peptidase 4 with an indole scaffold inhibitor

Xiao, P., Guo, R., Huang, S., Cui, H., Ye, S., Zhang, Z.

(2014) Chin Chem Lett 25: 673-676

Released	2015-03-18
Method	X-RAY DIFFRACTION 3.24 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 soluble form (protein)
Unique Ligands	CJP

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4QE7	Download File View File

Open MthK pore structure soaked in 10 mM Ba2+/100 mM Na+

Guo, R., Zeng, W., Cui, H., Chen, L., Ye, S.

(2014) J Gen Physiol 144: 193-200

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Calcium-gated potassium channel MthK (protein)
Unique Ligands	BA

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4QE9	Download File View File

Open MthK pore structure soaked in 10 mM Ba2+/100 mM K+

Guo, R., Zeng, W., Cui, H., Chen, L., Ye, S.

(2014) J Gen Physiol 144: 193-200

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Calcium-gated potassium channel MthK (protein)
Unique Ligands	K

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4RO0	Download File View File

Crystal structure of MthK gating ring in a ligand-free form

Dong, W., Guo, R., Chai, H., Chen, Z., Cui, H., Ren, Z., Li, Y., Ye, S.

To be published

Released	2015-10-28
Method	X-RAY DIFFRACTION 3.18 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Calcium-gated potassium channel MthK (protein)

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4WJA	Download File View File

Crystal Structure of PAXX

Xing, M., Yang, M., Huo, W., Feng, F., Wei, L., Ning, S., Yan, Z., Li, W., Wang, Q., Hou, M., Dong, C., Guo, R., Gao, G., Ji, J., Lan, L., Liang, H., Xu, D.

(2015) Nat Commun 6: 6233-6233

Released	2015-03-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Uncharacterized protein C9orf142 (protein)

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5AEL	Download File View File

T. Brucei Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-597

Yang, G., Oldfield, E., No, J.H.

(2015) Antimicrob Agents Chemother 59: 7530

Released	2015-10-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Trypanosoma brucei
Macromolecule	FARNESYL PYROPHOSPHATE SYNTHASE (protein)
Unique Ligands	MG, QAF

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5GPN	Download File View File

Architecture of mammalian respirasome

Gu, J., Wu, M., Guo, R., Yang, M.

(2016) Nature 537: 639-643

Released	2017-04-05
Method	ELECTRON MICROSCOPY 5.4 Å
Organisms	Bos taurus Sus scrofa
Macromolecule	Unique protein chains: 63
Unique Ligands	CU, FES, FMN, HEA, HEC, HEM, MG, NDP, SF4, ZN

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5GUP	Download File View File

Cryo-EM structure of mammalian respiratory supercomplex I1III2IV1

Gu, J., Wu, M., Guo, R., Yang, M.

(2016) Cell 167: 1598-1609.e10

Released	2017-03-29
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 67
Unique Ligands	CDL, CU, FES, FMN, HEA, HEC, HEM, MG, NDP, PEE, PLX, SF4, ZMP, ZN

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5XTB	Download File View File

Cryo-EM structure of human respiratory complex I matrix arm

Gu, J., Wu, M., Yang, M.

(2017) Cell 170: 1247-1257.e12

Released	2017-08-30
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 18
Unique Ligands	8Q1, FES, FMN, NDP, SF4

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5XTC	Download File View File

Cryo-EM structure of human respiratory complex I transmembrane arm

Gu, J., Wu, M., Yang, M.

(2017) Cell 170: 1247-1257.e12

Released	2017-08-30
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 29
Unique Ligands	8Q1, CDL, PEE, PLX

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5XTD	Download File View File

Cryo-EM structure of human respiratory complex I

Gu, J., Wu, M., Yang, M.

(2017) Cell 170: 1247-1257.e12

Released	2017-08-30
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 44
Unique Ligands	8Q1, CDL, FES, FMN, NDP, PEE, PLX, SF4

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5XTE	Download File View File

Cryo-EM structure of human respiratory complex III (cytochrome bc1 complex)

Gu, J., Wu, M., Yang, M.

(2017) Cell 170: 1247-1257.e12

Released	2017-08-30
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 11
Unique Ligands	CDL, FES, HEC, HEM, PEE, PLX

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5XTH	Download File View File

Cryo-EM structure of human respiratory supercomplex I1III2IV1

Gu, J., Wu, M., Yang, M.

(2017) Cell 170: 1247-1257.e12

Released	2017-09-13
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	Unique protein chains: 68
Unique Ligands	8Q1, CDL, CU, FES, FMN, HEA, HEC, HEM, MG, NDP, PEE, PLX, SF4, ZN

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5XTI	Download File View File

Cryo-EM architecture of human respiratory chain megacomplex-I2III2IV2

Gu, J., Wu, M., Yang, M.

(2017) Cell 170: 1247-1257.e12

Released	2017-09-13
Method	ELECTRON MICROSCOPY 17.4 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	Unique protein chains: 68
Unique Ligands	8Q1, CDL, CU, FES, FMN, HEA, HEC, HEM, MG, NDP, PEE, PLX, SF4, ZN

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5Z62	Download File View File

Structure of human cytochrome c oxidase

Gu, J., Zong, S., Wu, M., Yang, M.

(2018) Cell Res 28: 1026-1034

Released	2019-02-27
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 14
Unique Ligands	CDL, CU, HEA, MG, PEE, ZN

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6ABO	Download File View File

human XRCC4 and IFFO1 complex

Li, J., Liu, L., Liang, H., Liu, Y., Xu, D.

(2019) Nat Cell Biol 21: 1273-1285

Released	2019-07-31
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	DNA repair protein XRCC4 (protein) Intermediate filament family orphan 1 (protein)
Unique Ligands	GOL, SO4

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6J54	Download File View File

Cryo-EM structure of the mammalian E-state ATP synthase FO section

Gu, J., Zhang, L., Yi, J., Yang, M.

(2019) Science 364: 1068-1075

Released	2019-06-26
Method	ELECTRON MICROSCOPY 3.94 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 11

1 to 25 of 123 Structures

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