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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "Lyase,Transferase/DNA"

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Search Summary

This query matches 3 Structures.

Refinements

Structure Determination Methodology

experimental (3)

Scientific Name of Source Organism

Homo sapiens (3)

Taxonomy

Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (3)

Polymer Entity Type

	DNA (3)
	Protein (3)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	3.0 - 3.5 (1)

Release Date

2005 - 2009 (3)

Enzyme Classification Name

	Lyases (3)
	Transferases (3)

Symmetry Type

Asymmetric (3)

SCOP Classification

	All alpha proteins (1)
	Alpha and beta proteins (a+b) (1)

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1 to 3 of 3 Structures

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3HW8	Download File View File

ternary complex of DNA polymerase lambda of a two nucleotide gapped DNA substrate with a C in the scrunch site

Garcia-Diaz, M., Bebenek, K., Larrea, A.A., Havener, J.M., Perera, L., Krahn, J.M., Pedersen, L.C., Ramsden, D.A., Kunkel, T.A.

To be published

Released	2009-08-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase lambda (protein) 5'-D(CPAPGPTPAPT)-3' (nucleic acid) 5'-D(CPGPGPCPCPAPAPTPAPCPTPG)-3' (nucleic acid) 5'-D(PGPCPCPG)-3' (nucleic acid)
Unique Ligands	D3T, EDO, MG, NA

Explore in 3D

3HWT	Download File View File

Ternary complex of DNA polymerase lambda bound to a two nucleotide gapped DNA substrate with a scrunched dA

Garcia-Diaz, M., Bebenek, K., Larrea, A.A., Pedersen, L.C., Kunkel, T.A.

To be published

Released	2009-08-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase lambda (protein) 5'-D(CPAPGPTPAP(2DT))-3' (nucleic acid) 5'-D(CPGPGPCPAPAPAPTPAPCPTPG)-3' (nucleic acid) 5'-D(PGPCPCPG)-3' (nucleic acid)
Unique Ligands	D3T, EDO, MG, NA

Explore in 3D

3HX0	Download File View File

ternary complex of L277A, H511A, R514 mutant pol lambda bound to a 2 nucleotide gapped DNA substrate with a scrunched dA

Garcia-Diaz, M., Bebenek, K., Larrea, A.A., Havener, J.M., Perera, L., Krahn, J.M., Pedersen, L.C., Ramsden, D.A., Kunkel, T.A.

To be published

Released	2009-08-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase lambda (protein) 5'-D(CPAPGPTPAPT)-3' (nucleic acid) 5'-D(CPGPGPCPAPAPAPTPAPCPTPG)-3' (nucleic acid) 5'-D(PGPCPCPG)-3' (nucleic acid)
Unique Ligands	D3T, MG, NA

1 to 3 of 3 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3HW8

ternary complex of DNA polymerase lambda of a two nucleotide gapped DNA substrate with a C in the scrunch site

3HWT

Ternary complex of DNA polymerase lambda bound to a two nucleotide gapped DNA substrate with a scrunched dA

3HX0

ternary complex of L277A, H511A, R514 mutant pol lambda bound to a 2 nucleotide gapped DNA substrate with a scrunched dA