1PVC

REFINEMENT OF THE SABIN STRAIN OF TYPE 3 POLIOVIRUS AT 2.4 ANGSTROMS AND THE CRYSTAL STRUCTURES OF ITS VARIANTS AT 2.9 ANGSTROMS RESOLUTION

• PDB DOI: https://doi.org/10.2210/pdb1PVC/pdb

• Classification: VIRUS
• Organism(s): Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)
• Mutation(s): No 


• Deposited: 1995-03-30 Released: 1995-09-15 
• Deposition Author(s): Syed, R., Filman, D.J., Hogle, J.M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Observed: 
  0.205 (Depositor) 

Literature

Refinement of the Sabin Strain of Type 3 Poliovirus at 2.4 Angstroms and the Crystal Structures of its Variants at 2.9 Angstroms Resolution

Syed, R., Filman, D.J., Hogle, J.M.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Hetero 300-mer - A60B60C60D60E60 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 300-mer - AA60AB60AC60AD60AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1 

Biological assembly 1 assigned by authors and generated by (software)

Macromolecule Content

• Total Structure Weight: 98.41 kDa 
• Atom Count: 7,075 
• Modelled Residue Count: 846 
• Deposited Residue Count: 882 
• Unique protein chains: 5

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
POLIOVIRUS TYPE 3, SABIN STRAIN	A [auth 0]	4	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
POLIOVIRUS TYPE 3, SABIN STRAIN	B [auth 1]	301	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)	Mutation(s): 0
UniProt
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)) Explore P03302  Go to UniProtKB:  P03302

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
POLIOVIRUS TYPE 3, SABIN STRAIN	C [auth 2]	271	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)	Mutation(s): 0
UniProt
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)) Explore P03302  Go to UniProtKB:  P03302

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
POLIOVIRUS TYPE 3, SABIN STRAIN	D [auth 3]	238	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)	Mutation(s): 0
UniProt
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)) Explore P03302  Go to UniProtKB:  P03302

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
POLIOVIRUS TYPE 3, SABIN STRAIN	E [auth 4]	68	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)	Mutation(s): 0
UniProt
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)) Explore P03302  Go to UniProtKB:  P03302

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SPH	F [auth 1]	SPHINGOSINE C18 H37 N O2 WWUZIQQURGPMPG-MSOLQXFVSA-N
MYR	G [auth 4]	MYRISTIC ACID C14 H28 O2 TUNFSRHWOTWDNC-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Observed: 0.205 (Depositor) 

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 321.06	α = 90
b = 358.62	β = 90
c = 381.82	γ = 90

Software Package:

Software Name	Purpose
X-PLOR	model building
X-PLOR	refinement
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 1995-09-15 
Deposition Author(s): Syed, R., Filman, D.J., Hogle, J.M.

Revision History  

• Version 1.0: 1995-09-15
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-06-05
  Changes: Data collection, Database references, Derived calculations, Other
• Version 1.4: 2024-10-30
  Changes: Structure summary